View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17222_low_18 (Length: 396)
Name: NF17222_low_18
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 39955706 - 39955359
Alignment:
| Q |
18 |
cagaccaaattgtatattatcaaggtctcttttttctaaaaaccggagttaaaattgggataagtatttttaataagggaaataaatatttaatgcatgc |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39955706 |
cagaccaaattgcatattatcaaggtctcttttttctaaaaaccggagttaaaattgggataagtatttttaataagggaaataaatatttaatgcatgc |
39955607 |
T |
|
| Q |
118 |
tttcttcaatttatttacnnnnnnnattaagtaattatgaaaaatatttgcttcattgtaggattgtccttcaaaagaaaatttgcaagtgcatatcgct |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39955606 |
tttcttcaatttatttactttttttattaagtaattatgaaaaatatttgcttcattgtaggattgtccttcaaaagaaaatttgcaagtgcatatcgct |
39955507 |
T |
|
| Q |
218 |
taccaatttaatcatatcataatattaccagaggaataaagggagacataaaagcaaatttctttagtctatttatcaaaatgtgaacttgagaatttta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39955506 |
taccaatttaatcatatcataatattaccagaggaataaagggagacataaaagcaaatttctttagtctatttatcaaaatgtgaacttgagaatttta |
39955407 |
T |
|
| Q |
318 |
aatattgaagtattaaagattaaaaatatggagtgctatcgttttgtc |
365 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39955406 |
aatgttgaagtattaaagattaaaaatatggagtgctatcgttttgtc |
39955359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 247 - 346
Target Start/End: Original strand, 26012157 - 26012256
Alignment:
| Q |
247 |
agaggaataaagggagacataaaagcaaatttctttagtctatttatcaaaatgtgaacttgagaattttaaatattgaagtattaaagattaaaaatat |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26012157 |
agaggaataaagggagacataaaagcaaatttctttagtctatttatcaagatgtgaacttgagaattttaaatattaaagtattaaagattaaaaatat |
26012256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University