View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17222_low_2 (Length: 667)
Name: NF17222_low_2
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-178; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 292 - 649
Target Start/End: Original strand, 49351241 - 49351598
Alignment:
| Q |
292 |
tgctttatctgattgctttcacttttgcattctcattcacataccaaatttagaagctcctacgttccaccttatcctccaaaaccaatcaacatggcag |
391 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49351241 |
tgctttacctgattggtttcacttttgcattctcattcacataccaaatttagaagctcctacgttccaccttatcctccaaaaccaatcaacatggcag |
49351340 |
T |
|
| Q |
392 |
aatcactcctctttggcgtggcagagtcattcattggaaaacttgcatccgttgctgttcaagaagcttctctatccctcggcgtctacaaggatcttca |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
49351341 |
aatcactcctctttggcgtggcagagtcattcattggaaaacttgcatccgttgctgttcaagaagcttctctatccctcagcgtctacaaggatcttca |
49351440 |
T |
|
| Q |
492 |
agaaatcnnnnnnnctgtctcacttgtcaaagccgtgttgttggacgctgaacaaaagcaatggcagaacaatgagctacgtgaatggctgaaacagatt |
591 |
Q |
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| T |
49351441 |
agaaatcaaaaaaactgtctcacttgtcaaagccgtgttgttggacgctgaacaaaagcaatggcagaacaatgagctacgtgaatggttgaaacagatt |
49351540 |
T |
|
| Q |
592 |
aagcgtgtcttctacgatgccgaagatgttatagatgatttcgaatgtgaggccttgc |
649 |
Q |
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| T |
49351541 |
aagcgcgtcttctacgatgccgaagatgttatagatgatttcgaatgtgaggccttgc |
49351598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 49350885 - 49351234
Alignment:
| Q |
1 |
taaagcaagatgtaattgattctgaaatatattggtccgacacacacatatcttttcactattacctttaattgtcctcataatattctgtttacattat |
100 |
Q |
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| T |
49350885 |
taaagcaagatgtaattgattctgaaatatattggtccgacacacacatatcttttcactatttcctttaattatcctcataatattctgtttacattat |
49350984 |
T |
|
| Q |
101 |
tggaatgctttgctgtcaaatttatgcaagttacatataaaatctatttagctgatcaaatcaaacacacacttagtataatagctggtccgaaagaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49350985 |
tggaatgctttgctgtcaaatttatgcaagttacatataaaatctatttagctgatcaaatcaaacacacacttagtataatagctggtctgaaagaaaa |
49351084 |
T |
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| Q |
201 |
-----------gnnnnnnnngaatgattgctaatcattgattggacactgtattagttcattcttccttgctcttatcttcttccacctttttcctccga |
289 |
Q |
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| T |
49351085 |
aacaaaaaaacaaaaaaaaataatgattgctaatcattgattggacactgtattagttcattcttccttgctcttatcttcttccacctttttcctccga |
49351184 |
T |
|
| Q |
290 |
agtgctttatctgattgctttcacttttgcattctcattcacataccaaa |
339 |
Q |
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|||||||||||||||||||||||||||||| || |||||| ||||||||| |
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| T |
49351185 |
agtgctttatctgattgctttcacttttgctttttcattcccataccaaa |
49351234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 372 - 649
Target Start/End: Original strand, 49339952 - 49340234
Alignment:
| Q |
372 |
aaaaccaatcaacatggcagaatcactcctctttggcgtggcagagtcattcattggaaaacttgcatccgttgctgttcaagaagcttctctatccctc |
471 |
Q |
| |
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||||| |||||||||||| |||||||| ||||| || || ||||||||||||||| | || ||||| || |||||||| | |||||||||||| | || |
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| T |
49339952 |
aaaacaaatcaacatggcggaatcactactcttcggagttgcagagtcattcattagtaagcttgcttctgttgctgtcaatgaagcttctctagcgctg |
49340051 |
T |
|
| Q |
472 |
ggc-----gtctacaaggatcttcaagaaatcnnnnnnnctgtctcacttgtcaaagccgtgttgttggacgctgaacaaaagcaatggcagaacaatga |
566 |
Q |
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| T |
49340052 |
ggctgggtgtctatgacgatctttaagaaataaaaaacattgtctcactcgtcaaagccgtgttattagatgctgaacaaaagcaatggcagaacaatga |
49340151 |
T |
|
| Q |
567 |
gctacgtgaatggctgaaacagattaagcgtgtcttctacgatgccgaagatgttatagatgatttcgaatgtgaggccttgc |
649 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49340152 |
gctacgtgaatggctgaaacagattaaccgtgttttctacgatgccgaagatgttatagatgatttcgaatgtgaggccttgc |
49340234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 3e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 369 - 649
Target Start/End: Complemental strand, 32784957 - 32784677
Alignment:
| Q |
369 |
tccaaaaccaatcaacatggcagaatcactcctctttggcgtggcagagtcattcattggaaaacttgcatccgttgctgttcaagaagcttctctatcc |
468 |
Q |
| |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||| | |
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| T |
32784957 |
tccaaaaccaaacaaaatggcagaatcactcctctttggcgtggcagagtcattcattgaaaaacttgcatccgttgctgttgaaaaagcttctctaacg |
32784858 |
T |
|
| Q |
469 |
ctcggcgtctacaaggatcttcaagaaatcnnnnnnnctgtctcacttgtcaaagccgtgttgttggacgctgaacaaaagcaatggcagaacaatgagc |
568 |
Q |
| |
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||||| |||||| | |||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
32784857 |
ctcggtgtctacgacaatcttcaagaaatcaaaaacactgtctcactcatcaaagccgtgttgttggacgctgaacaaacgcaatggcagaaccatgagc |
32784758 |
T |
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| Q |
569 |
tacgtgaatggctgaaacagattaagcgtgtcttctacgatgccgaagatgttatagatgatttcgaatgtgaggccttgc |
649 |
Q |
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| T |
32784757 |
tgcgtgaatggttgaaacagattaagcgggtcttctatgatgccgaagatgtaatcgatgattttgagtgcgaggccttgc |
32784677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 158; Significance: 1e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 369 - 647
Target Start/End: Complemental strand, 13441785 - 13441507
Alignment:
| Q |
369 |
tccaaaaccaatcaacatggcagaatcactcctctttggcgtggcagagtcattcattggaaaacttgcatccgttgctgttcaagaagcttctctatcc |
468 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||| | ||||||||||| | |
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| T |
13441785 |
tccaaaaccaatcaacatggcagaatcactcctctttggcgcggcagagtcattcattgaaaaacttgcatccattgctgttgataaagcttctctagcg |
13441686 |
T |
|
| Q |
469 |
ctcggcgtctacaaggatcttcaagaaatcnnnnnnnctgtctcacttgtcaaagccgtgttgttggacgctgaacaaaagcaatggcagaacaatgagc |
568 |
Q |
| |
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| T |
13441685 |
tttggtgtctacgacgttcttcaagaaataaaaaacactgtctcactcgtcaaagcagtgttgttggacgctgaacaaaggcaatggcagaacaatgaac |
13441586 |
T |
|
| Q |
569 |
tacgtgaatggctgaaacagattaagcgtgtcttctacgatgccgaagatgttatagatgatttcgaatgtgaggcctt |
647 |
Q |
| |
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| T |
13441585 |
taggtgaatggctgaaacagattaagcgggtcttctacgatgccgaagatgtaatcgatgattttgaatgtgaagcctt |
13441507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 565 - 649
Target Start/End: Complemental strand, 29603379 - 29603295
Alignment:
| Q |
565 |
gagctacgtgaatggctgaaacagattaagcgtgtcttctacgatgccgaagatgttatagatgatttcgaatgtgaggccttgc |
649 |
Q |
| |
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||||| |||||||||||| ||||||| || ||||||||||||||||| |||||||| || ||||||| || || ||||| |||| |
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| T |
29603379 |
gagcttcgtgaatggctgcaacagatcaaacgtgtcttctacgatgcagaagatgtaatcaatgattttgagtgcgaggcattgc |
29603295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 565 - 649
Target Start/End: Original strand, 29749915 - 29749999
Alignment:
| Q |
565 |
gagctacgtgaatggctgaaacagattaagcgtgtcttctacgatgccgaagatgttatagatgatttcgaatgtgaggccttgc |
649 |
Q |
| |
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||||| |||||||||||| ||||||| || ||||||||||||||||| |||||||| || ||||||| || || ||||| |||| |
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| T |
29749915 |
gagcttcgtgaatggctgcaacagatcaaacgtgtcttctacgatgcagaagatgtaatcaatgattttgagtgcgaggcattgc |
29749999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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