View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17222_low_20 (Length: 368)
Name: NF17222_low_20
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 32163768 - 32164124
Alignment:
| Q |
1 |
tgttctctcagcttgtgcttctgttggtgctcatcaaattggttcgtcccttcatggttttgccttaaagtatggcttggtatcctctagcatccatgtt |
100 |
Q |
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| T |
32163768 |
tgttctctcagcttgtgcttctgttggtgctcatcaaattggtttgtcccttcatggttttgccttaaagtatggcttggtatcctctagcatctatgtt |
32163867 |
T |
|
| Q |
101 |
ggcactgcgctgctcaacttttatgcaaaatgcggggatgcaacgtcagctcgtatggtgtttgatgggatgggagagaagaatgctgtgacgtgggctg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32163868 |
ggcactgcgctgctcaacttttatgcaaaatgcggggatgcaacgtcagctcgcatggtgtttgatgggatgggagagaagaatgctgtgacgtgggctg |
32163967 |
T |
|
| Q |
201 |
caatgattggtgggtgtggcatgcaaggtgatggagttggatctctagctctctttagggatatgttgaaagaggaacttgtgcctaatgaagttgtctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32163968 |
caatgattggtgggtgtggcatgcaaggtgatggagttggatctctagctctctttagggatatgttgaaagaggaacttgtgcctaatgaagttgtctt |
32164067 |
T |
|
| Q |
301 |
cacaactctattagcggcttgcagccattcagggatggttgaagaagggttgatgat |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32164068 |
cacaactctattagcggcttgcagccattcagggatggttgaagaagggttaatgat |
32164124 |
T |
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