View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17222_low_23 (Length: 350)
Name: NF17222_low_23
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_low_23 |
 | |
|
| [»] scaffold0695 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0695 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0695
Description:
Target: scaffold0695; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 4770 - 5104
Alignment:
| Q |
1 |
aatgcctcacgtactagcaatcaacaaatccctaaacatgggcaacttattagaaaatcaactaaaacagaaacataaaaatagcaaactgatgaatgct |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4770 |
aatgcctcacgtactagcaagcaacaaatccctaaacatgggcaacttattagaaaagcaactaaaacagaaacataaaaatagcaaactgatgaatgct |
4869 |
T |
|
| Q |
101 |
ccttgcagctagtacttttaaagttcaatgtggtcatagctaccattgtattcatctgtatgatccttatgagtatgaagatcaagcctaccattgttgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4870 |
ccttgcagctagtacttttaaagttcaatgtggtcatagctaccattgtcttcatctggatgatccttatgagtatgaagatcaagcctaccattgttgc |
4969 |
T |
|
| Q |
201 |
gtggcagtatcttcttcaacgaaggccaattggaaacaataagcttgactctaccaccgataaggtagtcatcagttgagcctggagcataataaatatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4970 |
gtggcagtatcttcttcaacgaaggccaattggaaagaataagcttgactctaccaccgataaggtagtcatcagttgagcctggagcataataaatatt |
5069 |
T |
|
| Q |
301 |
tgcatagtactctcctttgaagagataagcttcct |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
5070 |
tgcatagtactctcctttgaagagataagcttcct |
5104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 14125858 - 14125524
Alignment:
| Q |
1 |
aatgcctcacgtactagcaatcaacaaatccctaaacatgggcaacttattagaaaatcaactaaaacagaaacataaaaatagcaaactgatgaatgct |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14125858 |
aatgcctcacgtactagcaagcaacaaatccctaaacatgggcaacttattagaaaagcaactaaaacagaaacataaaaatagcaaactgatgaatgct |
14125759 |
T |
|
| Q |
101 |
ccttgcagctagtacttttaaagttcaatgtggtcatagctaccattgtattcatctgtatgatccttatgagtatgaagatcaagcctaccattgttgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14125758 |
tcttgcagctagtacttttaaagttcaatgtggtcatagctaccattgtcttcatctggatgatccttatgagtatgaagatcaagcctaccattgttgc |
14125659 |
T |
|
| Q |
201 |
gtggcagtatcttcttcaacgaaggccaattggaaacaataagcttgactctaccaccgataaggtagtcatcagttgagcctggagcataataaatatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14125658 |
gtggcagtatcttcttcaacgaaggccaattggaaagaataagcttgactctaccaccgataaggtagtcatcagttgagcctggagcataataaatatt |
14125559 |
T |
|
| Q |
301 |
tgcatagtactctcctttgaagagataagcttcct |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
14125558 |
tgcatagtactctcctttgaagagataagcttcct |
14125524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 14115528 - 14115203
Alignment:
| Q |
1 |
aatgcctcacgtactagcaatcaacaaatccctaaacatgggcaacttattagaaaatcaactaaaacagaaacataaaaatagcaaactgatgaatgct |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14115528 |
aatgcctcacgtactagcaagcaacaaatccctaaacatgggcaacttaatagaaaagcaactaaaacagaaacataaaaatagcaaactgatgaatgct |
14115429 |
T |
|
| Q |
101 |
ccttgcagctagtacttttaaagttcaatgtggtcatagctaccattgtattcatctgtatgatccttatgagtatgaagatcaagcctaccattgttgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||| | ||||||||||||||||||||||| | |||| |||||||||||||||| || |
|
|
| T |
14115428 |
ccttgcagctagtacttttaaagttcaacggggccatag---------tcttcatctgtatgatccttatgagaacgaaggtcaagcctaccattgtcgc |
14115338 |
T |
|
| Q |
201 |
gtggcagtatcttcttcaacgaaggccaattggaaacaataagcttgactctaccaccgataaggtagtcatcagttgagcctggagcataataaatatt |
300 |
Q |
| |
|
|||||||||| | ||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14115337 |
gtggcagtatgctgctcaacgagggccaattggaaagaataggcttgactctaccaccgataaggtagtcatcagttgtgcctggagcataataaatatt |
14115238 |
T |
|
| Q |
301 |
tgcatagtactctcctttgaagagataagcttcct |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
14115237 |
tgcatagtactctcctttgaagagataagcttcct |
14115203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University