View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17222_low_25 (Length: 337)
Name: NF17222_low_25
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_low_25 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 4260969 - 4260679
Alignment:
| Q |
1 |
caatgaagaccaattttcagctccattcaacactccatcttttatagtttccaaagcttcactgaacacttcaacagccacaattactccatcttccccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||| ||| || |
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|
| T |
4260969 |
caatgaagaccaattttcagctccattcaacactccatcttttatagtttccaaagcttcacttaacatttcaacagccacaattaatccattttctcca |
4260870 |
T |
|
| Q |
101 |
aataactcacttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgaaggagtcggtggttctaaacgattcctgcaatcgatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
4260869 |
aataactcacttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgcaggagtcgttggttctaaacgattcctgcaatcgatat |
4260770 |
T |
|
| Q |
201 |
tcaaacccatcacaacatttttgttctcaattttctctgctttcattctacataccaatgcataagcaatagataccacaaatgttgacaa |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4260769 |
tcaaacccatcacaacatttttgttctcaattttctctgctttcattctacataccaatgcataagcaatagataccacaaatgttgacaa |
4260679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 3 - 291
Target Start/End: Original strand, 4255506 - 4255794
Alignment:
| Q |
3 |
atgaagaccaattttcagctccattcaacactccatcttttatagtttccaaagcttcactgaacacttcaacagccacaattactccatcttcccccaa |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||| ||||||||||| ||||| |||| ||||||||||||||| |
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|
| T |
4255506 |
atgaagaccaattttcagctccattcaacactacatcttttaatgtttccaaagtttcactcaacacttcaacggccaccattagtccatcttcccccaa |
4255605 |
T |
|
| Q |
103 |
taactcacttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgaaggagtcggtggttctaaacgattcctgcaatcgatattc |
202 |
Q |
| |
|
|||||||| ||||||||||||| |||||| || |||||||||||||||||||||||||| |||||| |||| | ||||||||||||||||||||||||| |
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|
| T |
4255606 |
taactcacctgttttaacaatttcaagtcatgttccaatacaatttccaaaatatgttgcaggagtaggtgctcctaaacgattcctgcaatcgatattt |
4255705 |
T |
|
| Q |
203 |
aaacccatcacaacatttttgttctcaattttctctgctttcattctacataccaatgcataagcaatagataccacaaatgttgacaa |
291 |
Q |
| |
|
|||||||||| | |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
4255706 |
aaacccatcaaagcattcttgttctcaattttctcggctttcattctacataccaatgcataagcaatagatgccacaaatgttgacaa |
4255794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 4289208 - 4289497
Alignment:
| Q |
1 |
caatgaagaccaattttcagctccattcaacactccatcttttatagtttccaaagcttcactgaacacttcaacagccacaattactccatcttccccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4289208 |
caatgaagaccaattttcagctccattcaacactccatcttttatagtttccaaagcttcactcaacacttcaacagccacaattagtccatcttccccc |
4289307 |
T |
|
| Q |
101 |
aataactcacttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgaaggagtcggtggttctaaacgattcctgcaatcgatat |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | ||||||||||| | ||||| |||| |
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|
| T |
4289308 |
aataactcatttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgcaggaatcggctgatctaaacgattacgacaatcaatat |
4289407 |
T |
|
| Q |
201 |
tcaaacccatcacaacatttttgttctcaattttctctgctttcattctacataccaatgcataagcaatagataccacaaatgttgaca |
290 |
Q |
| |
|
||||| |||||| | |||||||||||||||||| |||||||||| ||| |||||| |||||||||| |||||||| ||||| ||||||| |
|
|
| T |
4289408 |
tcaaaaccatcatagcatttttgttctcaatttcttctgctttcactctgcatacccatgcataagctatagatacaacaaaagttgaca |
4289497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 3 - 290
Target Start/End: Complemental strand, 4266513 - 4266226
Alignment:
| Q |
3 |
atgaagaccaattttcagctccattcaacactccatcttttatagtttccaaagcttcactgaacacttcaacagccacaattactccatcttcccccaa |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4266513 |
atgaagaccaattttcagctccattcaacactccatcttttaaagtttccaaagcttcactcaacacttcaacagccacaattagtccatcttcccccaa |
4266414 |
T |
|
| Q |
103 |
taactcacttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgaaggagtcggtggttctaaacgattcctgcaatcgatattc |
202 |
Q |
| |
|
||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| |||| |||| | ||||||||||| | ||||| |||||| |
|
|
| T |
4266413 |
taactcatttgttttaacaattgcaagttttcctccaatacaatttccaaaatatgttgcaggaatcggctgatctaaacgattacgacaatcaatattc |
4266314 |
T |
|
| Q |
203 |
aaacccatcacaacatttttgttctcaattttctctgctttcattctacataccaatgcataagcaatagataccacaaatgttgaca |
290 |
Q |
| |
|
||| |||||| | |||||||||||||||||| |||| ||||| ||| |||||| |||||||||| |||||||| ||||| ||||||| |
|
|
| T |
4266313 |
aaaaccatcatagcatttttgttctcaatttcttctgttttcactctgcatacccatgcataagctatagatacaacaaaagttgaca |
4266226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 4297803 - 4298061
Alignment:
| Q |
1 |
caatgaagaccaattttcagctccattcaacactccatcttttatagtttccaaagcttcactgaacacttcaacagccacaattactccatcttccccc |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||| | ||||||| ||||| ||| || |
|
|
| T |
4297803 |
caatgaagaccaattttcagctccagtcaacactccatcttttaaagtttccaaagcttcactcaacacttcaacaactacaattagtccattttctcca |
4297902 |
T |
|
| Q |
101 |
aataactcacttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgaaggagtcggtggttctaaacgattcctgcaatcgatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | || | ||||||||| ||| |||||||||| |
|
|
| T |
4297903 |
aataactcacttgttttaacaattgcaagtcttcctccaatacaatttccaaaatatgttgcaggaattggctgatctaaacgagtccgacaatcgatat |
4298002 |
T |
|
| Q |
201 |
tcaaacccatcacaacatttttgttctcaattttctctgctttcattctacataccaat |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4298003 |
tcaaacccatcacaacatttttgttctcaattttctcggctttcattctacataccaat |
4298061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 4257781 - 4257989
Alignment:
| Q |
14 |
ttttcagctccattcaacactccatcttttatagtttccaaagcttcactgaacacttcaacagccacaattactccatcttcccccaataactcacttg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| ||||| ||| || ||||||||| ||| |
|
|
| T |
4257781 |
ttttcagctccattcaacactccatcttttaaagtttccaaagcttcactcaacacttcaacaaccacaattagtccattttctccaaataactcatttg |
4257880 |
T |
|
| Q |
114 |
ttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgaaggagtcggtggttctaaacga-ttcctgcaatcgatattcaaacccatca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
4257881 |
ttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgcaggagtcggttgttctaaacgatttcctgcaatcgatagtcaaacccatca |
4257980 |
T |
|
| Q |
213 |
caacatttt |
221 |
Q |
| |
|
||||||||| |
|
|
| T |
4257981 |
caacatttt |
4257989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 4284521 - 4284799
Alignment:
| Q |
13 |
attttcagctccattcaacactccatcttttatagtttccaaagcttcactgaacacttcaacagccacaattactccatcttcccccaataactcactt |
112 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| ||||||||||||||||| | ||||||||| ||||| |||| ||||||| |||||||||||||||| |
|
|
| T |
4284521 |
attttcagctccatttaacactacatcttttaaagtttccaaagcttcacctagcacttcaaccgccacgattagcccatctttccccaataactcactt |
4284620 |
T |
|
| Q |
113 |
gttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgaaggagtcggtggttctaaacgattcctgcaatcgatattcaaacccatca |
212 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||| |||||| |
|
|
| T |
4284621 |
gtttcaacaattgcaagtcttcctccaatacaatttccaaaatatgttgcaggagtcggtggttctaaacaattccgacaatcaatattcaaagccatca |
4284720 |
T |
|
| Q |
213 |
caacatttttgttctcaattttctctgctttcattctacataccaatgcataagcaatagataccacaaatgttgacaa |
291 |
Q |
| |
|
| |||||||||||||||||| | ||||||||||| ||||| | |||||||| || ||||| ||||| |||||||| |
|
|
| T |
4284721 |
gagcatttttgttctcaatttctttagctttcattctgtatacccaggcataagctatggatacaacaaaagttgacaa |
4284799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 4258319 - 4258388
Alignment:
| Q |
220 |
tttgttctcaattttctctgctttcattctacataccaatgcataagcaatagataccacaaatgttgac |
289 |
Q |
| |
|
||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4258319 |
tttgttctcaagtttttctgctttcagtctacataccaatgcataagcaatagataccacaaatgttgac |
4258388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 4259553 - 4259465
Alignment:
| Q |
199 |
attcaaacccatcacaacatttttgttctcaattttctctgctttcattc-------tacataccaatgcataagcaatagataccaca |
280 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
4259553 |
attcaaacccgacacaacttttttgttctcaattttctctgctttcattctaaatagtaaataccaatgcataagcaatagataccaca |
4259465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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