View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17222_low_26 (Length: 334)
Name: NF17222_low_26
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 8248302 - 8248482
Alignment:
| Q |
23 |
agttaaagtaagaaaaaggtgaatgacacgccgcataatgcggagcgaataacgagcatacttccatttttacaacaacctctttcgccaaagatcctta |
122 |
Q |
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| T |
8248302 |
agttaaagtgagaaaaagatgaatgacatgccgcataatgcgaaacgaataacgagcatacttccatttttccaacaacctctttcggcaaagttcctta |
8248401 |
T |
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| Q |
123 |
aaattggtcattgtttttaagctttcttccgttttctttaaccgctcacatggtttcgaaattggattcattagcataaacttcacc |
209 |
Q |
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| T |
8248402 |
aagttggtcattgtttttaagctttcttccgttttcttta------cacatggtttcgaaattggattcattagcataaacttcacc |
8248482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 46 - 212
Target Start/End: Original strand, 8237153 - 8237319
Alignment:
| Q |
46 |
tgacacgccgcataatgcggagcgaataacgagcatacttccatttttacaacaacctctttcgccaaagatccttaaaattggtcattgtttttaagct |
145 |
Q |
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| T |
8237153 |
tgacacgccgtattgtgcggagcgaataacgaacatacttccatttttacaacagtttttcttgatgaagtttcttaaaattgatcgttggtttaaagat |
8237252 |
T |
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| Q |
146 |
ttcttccgttttctttaaccgctcacatggtttcgaaattggattcattagcataaacttcaccata |
212 |
Q |
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| T |
8237253 |
ttcttcagttttgtttaaccactcacgtggtttcaaacttggattcatatgcatgtacttcaccata |
8237319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 8243809 - 8243850
Alignment:
| Q |
67 |
gcgaataacgagcatacttccatttttacaacaacctctttc |
108 |
Q |
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| T |
8243809 |
gcgaataacgagcatacttccatttttaaaacaatctctttc |
8243850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 8233968 - 8234032
Alignment:
| Q |
36 |
aaaaggtgaatgacacgccgcataatgcggagcgaataacgagcatacttccatttttacaacaa |
100 |
Q |
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| T |
8233968 |
aaaagatgaatgacataccgcattgtacggagcgaataatgaacatacttccatttttacaacaa |
8234032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 8447379 - 8447449
Alignment:
| Q |
35 |
aaaaaggtgaatgacacgccgcataatgcggagcgaataacgagcatacttccatttttacaacaacctct |
105 |
Q |
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| T |
8447379 |
aaaaaagtgaataacatgccgcattatatggaacgaataacatgcatactttcatttttacaacaacctct |
8447449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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