View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17222_low_27 (Length: 332)
Name: NF17222_low_27
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 39 - 316
Target Start/End: Original strand, 15200445 - 15200723
Alignment:
| Q |
39 |
taacttttgtcatagcttttgttcaaaatgttagccatgtgctatgtcaccatcttcttt-gctcttatatcttctttatgtaatgcttctaataatgtc |
137 |
Q |
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| T |
15200445 |
taacttttctgacagcttttgttcaaaatgttagccatgtgctatgtcaccatcttctttcgctcttatatcttctttatgtaatgcttctaataatgtc |
15200544 |
T |
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| Q |
138 |
atgctccacgaaaaccaaaccatgaatatctacccagtctccaatagaactaaagtctttattgtattgcctctaaattcagaatcgttgcaatttgatt |
237 |
Q |
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| T |
15200545 |
atgctcaaggaaaaccaaaccatgaatatctacccagtctccaatagcactaaagtctttattgcattgcctctaaattcagaatcgttgcaatttgatt |
15200644 |
T |
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| Q |
238 |
gtaaacctgaggaagtggggagtttcgtaacacaacctggaaaaacacttgaatggcatctttcctataacgacattgt |
316 |
Q |
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| T |
15200645 |
gtgaacctaaggaagtggggagtttcgtaacacaacctggaaaaacacttgaatggcatctttcctataacgacattgt |
15200723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 60 - 301
Target Start/End: Original strand, 17456075 - 17456316
Alignment:
| Q |
60 |
ttcaaaatgttagccatgtgctatgtcaccatcttctttgctcttatatcttctttatgtaatgcttctaataatgtcatgctccacgaaaaccaaacca |
159 |
Q |
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| T |
17456075 |
ttcaaaatgttagccatgtgctatgtcaccatcctcctttctcttatatcttctttatgtaatgcttctaatgatgtcatgcttcaggaaaaccaaacca |
17456174 |
T |
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| Q |
160 |
tgaatatctacccagtctccaatagaactaaagtctttattgtattgcctctaaattcagaatcgttgcaatttgattgtaaacctgaggaagtggggag |
259 |
Q |
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| T |
17456175 |
tgaataccatccccgtctccaatatcactaaagtctttattgcattgcctctaaattcagaatcgttgcactttgattgtgaacctgaggaggtgggaag |
17456274 |
T |
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| Q |
260 |
tttcgtaacacaacctggaaaaacacttgaatggcatctttc |
301 |
Q |
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| T |
17456275 |
tttcgatacacaaccaggaaaaacacttgaatggcatgtttc |
17456316 |
T |
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