View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17222_low_29 (Length: 314)

Name: NF17222_low_29
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17222_low_29
NF17222_low_29
[»] chr8 (3 HSPs)
chr8 (12-314)||(6135201-6135503)
chr8 (12-314)||(6173256-6173558)
chr8 (206-314)||(6126826-6126934)
[»] chr4 (1 HSPs)
chr4 (72-314)||(37615997-37616236)
[»] chr6 (2 HSPs)
chr6 (143-314)||(22083243-22083414)
chr6 (72-125)||(22083411-22083464)


Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 6135201 - 6135503
Alignment:
Q  12 ataggaaacataacaagcataataataaggtaaattctaaaatggaggtgccagtctcattatggcataatttccttcaagcgtatcataatttgaatcc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6135201 ataggaaacataacaagcataataataaggtaaattctaaaatggaggtgccagtctcattatggcatgatttccttcaagcgtatcataatttgaatcc 6135300  T
Q  112 aactcccgcttcttcttgtttacattatcaatcttctcgcgggtttgtatggtcatagaggctacatttttagcttcttccaaaatttcagatctcttct 211  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6135301 aacttccgcttcttcttgtttacattatcaatcttctcgcgggtttgtatggtcatagaggctacatttttagcttcttccaaaatttcagatctcttct 6135400  T
Q  212 ccttacattttgagcaagcatcctctaactgtgacttctcctgtaaaaccttacgtgctttctcctcgagcaaacgaatctgtgctttgatatcttcaat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6135401 ccttacattttgagcaagcatcctctaactgtgacttctcctgtaaaaccttacgtgctttctcctcgagcaaacgaatctgtgctttgatatcttcaat 6135500  T
Q  312 ttc 314  Q
    |||    
T  6135501 ttc 6135503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 6173256 - 6173558
Alignment:
Q  12 ataggaaacataacaagcataataataaggtaaattctaaaatggaggtgccagtctcattatggcataatttccttcaagcgtatcataatttgaatcc 111  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  6173256 ataggaaatataacaagcataataataaggtaaattctaaaatggaggtgacagtctcattatggcataatttccttcaagcgtctcataattcgaatcc 6173355  T
Q  112 aactcccgcttcttcttgtttacattatcaatcttctcgcgggtttgtatggtcatagaggctacatttttagcttcttccaaaatttcagatctcttct 211  Q
    ||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||    
T  6173356 aactcccgcttcttcttttttagattatcaatcttctcacgggtttgtatggtcgtagaggctacatttttagcttcttccacaatttcagttctcttct 6173455  T
Q  212 ccttacattttgagcaagcatcctctaactgtgacttctcctgtaaaaccttacgtgctttctcctcgagcaaacgaatctgtgctttgatatcttcaat 311  Q
    |||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6173456 ccttacattttgagcaagcatcctctaactgtgacttctcttgttgaaccttacgtgctttctcctcgagcaaacgaatctgtgctttgatatcttcaat 6173555  T
Q  312 ttc 314  Q
    |||    
T  6173556 ttc 6173558  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 206 - 314
Target Start/End: Original strand, 6126826 - 6126934
Alignment:
Q  206 tcttctccttacattttgagcaagcatcctctaactgtgacttctcctgtaaaaccttacgtgctttctcctcgagcaaacgaatctgtgctttgatatc 305  Q
    ||||||| |||||||| |||||  |||| |||||||| |||||||| |||  |||||||||| || | |||||||||||| |||| |||||||| |||||    
T  6126826 tcttctctttacatttggagcagccatcttctaactgcgacttctcttgttgaaccttacgtactctttcctcgagcaaaagaatttgtgctttaatatc 6126925  T
Q  306 ttcaatttc 314  Q
    |||||||||    
T  6126926 ttcaatttc 6126934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 72 - 314
Target Start/End: Original strand, 37615997 - 37616236
Alignment:
Q  72 tatggcataatttccttcaagcgtatcataatttgaatccaactcccgcttcttcttgtttacattatcaatcttctcgcgggtttgtatggtcatagag 171  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||   ||||||||||||||||||||||||||||||||| ||||||    
T  37615997 tatggcataatttccttcaagtgtatcataatttgaattcaactcccgcttcttttt---tacattatcaatcttctcgcgggtttgtatggtaatagag 37616093  T
Q  172 gctacatttttagcttcttccaaaatttcagatctcttctccttacattttgagcaagcatcctctaactgtgacttctcctgtaaaaccttacgtgctt 271  Q
    |||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| || |||||| |||  |||| |||||||||    
T  37616094 gctacatttttagcttcttccacaatttcagttatcttctccttacattttgagcaagcatcctctaactatggcttctcttgttgaaccctacgtgctt 37616193  T
Q  272 tctcctcgagcaaacgaatctgtgctttgatatcttcaatttc 314  Q
    |||||| | |||||||| |||||||||||||||||||||||||    
T  37616194 tctccttgtgcaaacgattctgtgctttgatatcttcaatttc 37616236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 143 - 314
Target Start/End: Complemental strand, 22083414 - 22083243
Alignment:
Q  143 tcttctcgcgggtttgtatggtcatagaggctacatttttagcttcttccaaaatttcagatctcttctccttacattttgagcaagcatcctctaactg 242  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||     
T  22083414 tcttgtcgcgggtttgtatggtaatagaggctacatttttagcttcttccacaatttcagttatcttctccttacattttgagcaagcatcctctaacta 22083315  T
Q  243 tgacttctcctgtaaaaccttacgtgctttctcctcgagcaaacgaatctgtgctttgatatcttcaatttc 314  Q
    || |||||| |||  |||| ||||||||||||||||| |||||||| | || ||||||||||||||||||||    
T  22083314 tggcttctcttgttgaaccctacgtgctttctcctcgtgcaaacgattttgagctttgatatcttcaatttc 22083243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 22083464 - 22083411
Alignment:
Q  72 tatggcataatttccttcaagcgtatcataatttgaatccaactcccgcttctt 125  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  22083464 tatggcataatttccttcaagtgtatcataatttgaattcaactcccgcttctt 22083411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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