View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17222_low_3 (Length: 602)
Name: NF17222_low_3
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Original strand, 6063692 - 6064244
Alignment:
| Q |
1 |
ggtggtggaagctcttcttttccaagagctcattgggtaggtgtaaaattttgtcaatcagaatctgttaacggtggtaaaatagttgaagcttcacaac |
100 |
Q |
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| T |
6063692 |
ggtggtggaagctcttcttttccaagagctcattgggtaggtgtaaaattttgtcaatcagaatctgttaacggtggtaaaatagttgaagcttcacaac |
6063791 |
T |
|
| Q |
101 |
cgatgaagaagagtcgtagaggaccaaggtccagaagttctcagtatagaggtgttactttttacagaagaacaggtcgatgggagtctcatatatg--- |
197 |
Q |
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| T |
6063792 |
cgatgaagaagagtcgtagaggaccaaggtccagaagttctcagtatagaggtgttactttttacagaagaacaggtcgatgggagtctcatatatggtt |
6063891 |
T |
|
| Q |
198 |
-gttagtatatttttcaatattacctctctgaagcacagcacagcacggattagacgtgtctctgtgtcaaacacacttgatgtctgaattcannnnnnn |
296 |
Q |
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| T |
6063892 |
agttagtatatttttcaatattacctctctga----------agcacggattagacgtgtctcagtgtcaaacacacttgatgtctgaattcatttt--- |
6063978 |
T |
|
| Q |
297 |
nncttcaaccaggggcgatatatccatgttagaattgtgtctgatgttcgtgtctgatgctttataatacttaaataaattattaattattaatcaatct |
396 |
Q |
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| T |
6063979 |
---ttcaaccaggggcgatatatccatgttagaattgtg--------tcgtgtctg-tgctttacaatactta--------attaattattaatcaatct |
6064058 |
T |
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| Q |
397 |
acaaagttgaaaatatgaatttgaatgttgtttggttgtgtttgtgatgcagggattgtggaaaacaagtgtatttgggtaagtattaatattttgatat |
496 |
Q |
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| T |
6064059 |
acaaagttgaaaatatgaatttgaatgttgtttggttgtgtttgtgatgcagggattgtggaaaacaagtgtatttgggtaagtattaatattttgatat |
6064158 |
T |
|
| Q |
497 |
aagatcagttacatatgtggtggttaaaagtggctnnnnnnnttgttttttatttaataataaaaattgatttgggagggagacag |
582 |
Q |
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| T |
6064159 |
aagatcagttacatatgtggtggttaaaagtggctaaaaaatttgttttttatttaataataaaaattgatttgggagggagacag |
6064244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 39155897 - 39155786
Alignment:
| Q |
92 |
cttcacaaccgatgaagaagagtcgtagaggaccaaggtccagaagttctcagtatagaggtgttactttttacagaagaacaggtcgatgggagtctca |
191 |
Q |
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| T |
39155897 |
cttcacaacctatgaagaaaagtagaagaggaccaaggtcaagaagttcacaatatagaggagttactttttacagaagaacaggtcgatgggaatcaca |
39155798 |
T |
|
| Q |
192 |
tatatggttagt |
203 |
Q |
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| T |
39155797 |
tatatggttagt |
39155786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 39155976 - 39155941
Alignment:
| Q |
28 |
gctcattgggtaggtgtaaaattttgtcaatcagaa |
63 |
Q |
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| T |
39155976 |
gctcattgggtaggtgtgaaattttgtcaatcagaa |
39155941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 482
Target Start/End: Complemental strand, 39155701 - 39155663
Alignment:
| Q |
444 |
tgcagggattgtggaaaacaagtgtatttgggtaagtat |
482 |
Q |
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| T |
39155701 |
tgcagggattgtggaaaacaagtgtatcttggtaagtat |
39155663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 200
Target Start/End: Original strand, 40511692 - 40511788
Alignment:
| Q |
104 |
tgaagaagagtcgtagaggaccaaggtccagaagttctcagtatagaggtgttactttttacagaagaacaggtcgatgggagtctcatatatggtt |
200 |
Q |
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| T |
40511692 |
tgaagaagagtcgtcgtggaccgaggtcacgaagctcgcagtatcgtggtgttactttctaccggagaactggacgttgggaatctcatatttggtt |
40511788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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