View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17222_low_33 (Length: 303)

Name: NF17222_low_33
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17222_low_33
NF17222_low_33
[»] chr1 (33 HSPs)
chr1 (34-270)||(50118689-50118924)
chr1 (179-285)||(30530327-30530441)
chr1 (212-279)||(34157553-34157620)
chr1 (179-270)||(49621406-49621504)
chr1 (218-273)||(5043132-5043187)
chr1 (212-274)||(25302613-25302675)
chr1 (230-270)||(23554794-23554834)
chr1 (230-270)||(24158693-24158733)
chr1 (212-279)||(8670108-8670175)
chr1 (212-284)||(11121511-11121584)
chr1 (212-259)||(33111881-33111928)
chr1 (212-284)||(46039932-46040006)
chr1 (215-270)||(52368711-52368766)
chr1 (220-270)||(3606072-3606122)
chr1 (242-284)||(9987981-9988023)
chr1 (215-270)||(21255756-21255813)
chr1 (228-270)||(26214178-26214220)
chr1 (220-270)||(30196757-30196807)
chr1 (228-270)||(34941906-34941948)
chr1 (238-284)||(44950417-44950462)
chr1 (242-284)||(45008163-45008205)
chr1 (220-270)||(47113317-47113367)
chr1 (228-270)||(47279701-47279743)
chr1 (212-270)||(21441679-21441739)
chr1 (226-279)||(25672376-25672429)
chr1 (225-270)||(25702198-25702243)
chr1 (230-279)||(27687507-27687556)
chr1 (245-282)||(37275036-37275073)
chr1 (212-270)||(39815389-39815449)
chr1 (214-270)||(49596278-49596332)
chr1 (230-270)||(33669797-33669837)
chr1 (230-270)||(37843420-37843460)
chr1 (230-270)||(49425780-49425820)
[»] chr4 (38 HSPs)
chr4 (174-279)||(46912722-46912836)
chr4 (179-272)||(31804259-31804359)
chr4 (215-267)||(54801044-54801096)
chr4 (242-284)||(1795981-1796023)
chr4 (242-284)||(34363583-34363625)
chr4 (242-284)||(50721744-50721786)
chr4 (212-270)||(1688396-1688456)
chr4 (179-270)||(4514193-4514293)
chr4 (215-270)||(18874895-18874950)
chr4 (212-284)||(30890253-30890326)
chr4 (226-285)||(46634128-46634187)
chr4 (242-284)||(7632461-7632503)
chr4 (178-212)||(24235430-24235464)
chr4 (230-284)||(31574927-31574981)
chr4 (220-270)||(33776939-33776989)
chr4 (230-272)||(35332747-35332789)
chr4 (220-270)||(45274308-45274358)
chr4 (215-270)||(46566972-46567029)
chr4 (220-265)||(4512706-4512751)
chr4 (222-270)||(17363273-17363322)
chr4 (212-270)||(25725662-25725722)
chr4 (238-279)||(28676148-28676189)
chr4 (212-270)||(36812371-36812431)
chr4 (215-272)||(37977158-37977215)
chr4 (212-270)||(43864076-43864136)
chr4 (215-272)||(51717255-51717312)
chr4 (230-270)||(2193797-2193837)
chr4 (230-270)||(4511857-4511897)
chr4 (230-286)||(4949222-4949277)
chr4 (245-285)||(5622486-5622526)
chr4 (230-270)||(22893911-22893951)
chr4 (230-270)||(22945579-22945619)
chr4 (236-284)||(24337350-24337397)
chr4 (220-285)||(29525887-29525953)
chr4 (230-270)||(30778252-30778292)
chr4 (230-270)||(32901372-32901412)
chr4 (245-285)||(43175012-43175052)
chr4 (230-270)||(55595992-55596032)
[»] chr3 (32 HSPs)
chr3 (174-270)||(3484802-3484905)
chr3 (226-284)||(44463386-44463444)
chr3 (179-279)||(23920333-23920440)
chr3 (212-261)||(26669082-26669133)
chr3 (215-270)||(33074917-33074973)
chr3 (215-288)||(33971909-33971983)
chr3 (215-284)||(45292999-45293070)
chr3 (230-270)||(52678565-52678605)
chr3 (212-288)||(21481790-21481867)
chr3 (212-284)||(34900670-34900743)
chr3 (215-263)||(46315926-46315976)
chr3 (215-270)||(49361808-49361863)
chr3 (230-288)||(2935499-2935556)
chr3 (212-259)||(21579168-21579217)
chr3 (212-270)||(26668885-26668943)
chr3 (230-288)||(30664529-30664586)
chr3 (236-270)||(35425666-35425700)
chr3 (228-270)||(43176245-43176286)
chr3 (212-270)||(1834549-1834609)
chr3 (228-285)||(7934003-7934060)
chr3 (228-285)||(9027642-9027698)
chr3 (245-282)||(34064108-34064145)
chr3 (175-212)||(44910814-44910851)
chr3 (212-285)||(16295493-16295567)
chr3 (230-270)||(35272070-35272110)
chr3 (227-279)||(37134591-37134643)
chr3 (179-211)||(37323778-37323810)
chr3 (230-270)||(40785687-40785727)
chr3 (230-270)||(41957558-41957598)
chr3 (225-261)||(43499545-43499581)
chr3 (230-270)||(43900745-43900785)
chr3 (236-284)||(44972732-44972779)
[»] chr2 (29 HSPs)
chr2 (230-288)||(12208468-12208525)
chr2 (179-270)||(2308252-2308350)
chr2 (230-288)||(1096331-1096388)
chr2 (228-270)||(13881138-13881180)
chr2 (228-270)||(14021263-14021305)
chr2 (174-211)||(25994212-25994249)
chr2 (234-270)||(36795773-36795809)
chr2 (220-287)||(17999773-17999839)
chr2 (179-285)||(546313-546427)
chr2 (215-270)||(4263835-4263892)
chr2 (230-288)||(5852500-5852557)
chr2 (215-270)||(8757587-8757644)
chr2 (236-270)||(35965618-35965652)
chr2 (220-263)||(38912575-38912620)
chr2 (228-270)||(42554819-42554861)
chr2 (212-270)||(5191662-5191722)
chr2 (212-270)||(7497959-7498019)
chr2 (222-286)||(11728100-11728164)
chr2 (225-270)||(25801796-25801841)
chr2 (215-268)||(26809536-26809589)
chr2 (212-270)||(31635778-31635838)
chr2 (230-279)||(36133008-36133057)
chr2 (212-270)||(38600857-38600917)
chr2 (228-285)||(39147794-39147851)
chr2 (215-259)||(5167713-5167757)
chr2 (230-282)||(11126495-11126547)
chr2 (230-270)||(14797638-14797678)
chr2 (238-270)||(36763520-36763552)
chr2 (215-259)||(40951247-40951290)
[»] chr7 (29 HSPs)
chr7 (212-288)||(48639353-48639428)
chr7 (186-270)||(17500740-17500833)
chr7 (186-270)||(17552381-17552474)
chr7 (215-270)||(21839104-21839161)
chr7 (230-270)||(2756917-2756957)
chr7 (230-286)||(7295478-7295534)
chr7 (212-284)||(13437228-13437299)
chr7 (230-270)||(37392086-37392126)
chr7 (230-285)||(5724067-5724121)
chr7 (215-270)||(10619672-10619727)
chr7 (215-270)||(28110000-28110055)
chr7 (212-259)||(34304648-34304695)
chr7 (242-284)||(17002366-17002408)
chr7 (228-270)||(25614807-25614849)
chr7 (230-284)||(37899353-37899407)
chr7 (238-272)||(45154536-45154570)
chr7 (242-284)||(47954101-47954143)
chr7 (212-270)||(9055310-9055370)
chr7 (230-263)||(16567366-16567399)
chr7 (230-263)||(16598263-16598296)
chr7 (222-270)||(27331006-27331055)
chr7 (230-267)||(46148212-46148249)
chr7 (230-270)||(4971333-4971373)
chr7 (230-270)||(27866525-27866565)
chr7 (230-270)||(36186864-36186904)
chr7 (228-284)||(37385219-37385274)
chr7 (230-270)||(41666955-41666995)
chr7 (222-270)||(41985080-41985128)
chr7 (214-270)||(43107653-43107709)
[»] chr6 (16 HSPs)
chr6 (179-279)||(7693349-7693458)
chr6 (191-270)||(9188886-9188972)
chr6 (212-270)||(14094954-14095014)
chr6 (214-285)||(2333394-2333464)
chr6 (222-288)||(22422176-22422242)
chr6 (230-288)||(12151845-12151902)
chr6 (222-270)||(9395316-9395365)
chr6 (238-279)||(12177600-12177641)
chr6 (230-279)||(30253301-30253350)
chr6 (247-284)||(35077153-35077190)
chr6 (245-285)||(5080570-5080610)
chr6 (242-282)||(16337922-16337962)
chr6 (230-270)||(23633311-23633351)
chr6 (230-270)||(25561928-25561968)
chr6 (230-270)||(25567478-25567518)
chr6 (230-270)||(26101442-26101482)
[»] scaffold0504 (1 HSPs)
scaffold0504 (174-270)||(10658-10763)
[»] scaffold0014 (2 HSPs)
scaffold0014 (230-270)||(199309-199349)
scaffold0014 (230-288)||(145087-145144)
[»] chr8 (23 HSPs)
chr8 (238-270)||(6849257-6849289)
chr8 (212-272)||(295587-295649)
chr8 (215-270)||(14548796-14548851)
chr8 (212-259)||(45081123-45081170)
chr8 (228-270)||(18538418-18538460)
chr8 (230-288)||(21649156-21649213)
chr8 (236-270)||(29910206-29910240)
chr8 (214-272)||(30608680-30608738)
chr8 (212-263)||(33415679-33415732)
chr8 (231-285)||(34810630-34810684)
chr8 (247-285)||(38578369-38578407)
chr8 (212-270)||(40459732-40459790)
chr8 (212-270)||(9431253-9431313)
chr8 (230-267)||(33863236-33863273)
chr8 (230-259)||(40997711-40997740)
chr8 (176-212)||(154400-154436)
chr8 (245-285)||(4054289-4054329)
chr8 (230-286)||(5742645-5742700)
chr8 (242-282)||(8671555-8671595)
chr8 (245-285)||(25987789-25987829)
chr8 (230-270)||(27630940-27630980)
chr8 (230-270)||(38174221-38174261)
chr8 (228-272)||(43590735-43590779)
[»] chr5 (29 HSPs)
chr5 (236-288)||(3031860-3031911)
chr5 (230-270)||(31329114-31329154)
chr5 (230-270)||(41460159-41460199)
chr5 (230-285)||(1108010-1108064)
chr5 (242-285)||(7287189-7287232)
chr5 (238-285)||(28306128-28306175)
chr5 (246-284)||(1274387-1274425)
chr5 (215-270)||(3960140-3960197)
chr5 (242-284)||(4088473-4088515)
chr5 (215-270)||(6964337-6964394)
chr5 (230-284)||(9168152-9168206)
chr5 (220-270)||(9940099-9940149)
chr5 (242-284)||(16690529-16690571)
chr5 (230-288)||(18729277-18729334)
chr5 (212-279)||(31024973-31025042)
chr5 (230-284)||(41173282-41173336)
chr5 (226-279)||(884476-884529)
chr5 (245-282)||(6931061-6931098)
chr5 (230-267)||(18638813-18638850)
chr5 (212-270)||(32873117-32873177)
chr5 (212-270)||(33743301-33743361)
chr5 (215-259)||(582840-582884)
chr5 (230-270)||(2117612-2117652)
chr5 (215-270)||(6458811-6458867)
chr5 (230-270)||(8725410-8725450)
chr5 (230-270)||(17063908-17063948)
chr5 (245-285)||(19522006-19522046)
chr5 (238-270)||(26627373-26627405)
chr5 (222-279)||(32424985-32425044)
[»] scaffold0072 (1 HSPs)
scaffold0072 (214-261)||(14523-14570)
[»] scaffold0041 (1 HSPs)
scaffold0041 (215-270)||(34451-34506)
[»] scaffold0238 (1 HSPs)
scaffold0238 (212-259)||(16445-16494)
[»] scaffold0003 (1 HSPs)
scaffold0003 (238-284)||(337148-337193)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 34 - 270
Target Start/End: Original strand, 50118689 - 50118924
Alignment:
Q  34 ggagtacttaagaaataaaagcttttacgagaaagatgttataaatatttgggggtacttaaagaaataaaagcttttacgggaaagatgttataaatat 133  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  50118689 ggagtactgaagaaataaaagcttttacgagaaagatgttataaatatttgggggtacttaa-gaaataaaagcttttacgagaaagatgttataaatat 50118787  T
Q  134 ttatcagaaactatataaaaaatagagtagatgtagaataatttgtgacaattttcattttctctcttcttattggtcatagagaaagaaaaagaaagag 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50118788 ttatcagaaactatataaaaaatagagtagatgtagaataatttgtgacaattttcattttctctcttcttattggtcatagagaaagaaaaagaaagag 50118887  T
Q  234 ataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| |||||||||||| ||||| ||||||||||    
T  50118888 ataataaaaatataatgtgaatatgagagataaagtt 50118924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 30530327 - 30530441
Alignment:
Q  179 tgacaattttcattttctctcttcttattggtc-------atagagaaagaaaaagaaagag--ataataagaatataatgtgagtatgaaagataaagt 269  Q
    |||||| ||||||||||||||||||||||||||       || |||| |||||||| |||||  |||||||||||||||||||||||||| ||| |||||    
T  30530327 tgacaactttcattttctctcttcttattggtccaaaacaatggagacagaaaaaggaagagagataataagaatataatgtgagtatgagagagaaagt 30530426  T
Q  270 tattacaaaagttgta 285  Q
    | ||| ||||||||||    
T  30530427 tgtta-aaaagttgta 30530441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 34157620 - 34157553
Alignment:
Q  212 atagagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagttattacaaaa 279  Q
    ||||| |||||||||| |||||| |||||||| ||||||||||||||| |||||||||| ||| ||||    
T  34157620 atagataaagaaaaaggaagagagaataagaagataatgtgagtatgagagataaagttgttaaaaaa 34157553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 49621504 - 49621406
Alignment:
Q  179 tgacaattttcattttctctcttcttattggtcata-------gagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| ||||||||||||||| |||||||||| |       |||| ||||||| ||||||||| |||||||| ||||||||||||| ||| ||||||    
T  49621504 tgacaatcttcattttctctctttttattggtcaaaaacaatggagagagaaaaaaaaagagatagtaagaatagaatgtgagtatgagagagaaagtt 49621406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 273
Target Start/End: Complemental strand, 5043187 - 5043132
Alignment:
Q  218 aaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagttatt 273  Q
    ||||||||||||| ||| | |||||||||||||||| ||||||||| |||||||||    
T  5043187 aaagaaaaagaaaaagagagtaagaatataatgtgaatatgaaagagaaagttatt 5043132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 25302613 - 25302675
Alignment:
Q  212 atagagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagttatta 274  Q
    ||||||| |||||||| |||||| ||||||| ||||||||||||||||  || ||||||||||    
T  25302613 atagagagagaaaaaggaagagagaataagagtataatgtgagtatgagtgagaaagttatta 25302675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 23554834 - 23554794
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  23554834 agagagaataagaatataatgtgagtatgagagataaagtt 23554794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 24158733 - 24158693
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| |||||||| ||||||||||||||||||||||||||    
T  24158733 agagagaataagaacataatgtgagtatgaaagataaagtt 24158693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 8670175 - 8670108
Alignment:
Q  212 atagagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagttattacaaaa 279  Q
    ||||||| ||||||||||| ||| ||||| |||||||||| | |||||| |||||| |||||| ||||    
T  8670175 atagagagagaaaaagaaaaagagaataaaaatataatgtaaatatgaatgataaaattattaaaaaa 8670108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 11121584 - 11121511
Alignment:
Q  212 atagagaaagaaaaagaaagagata--ataagaatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    |||||||||||||||| |||||| |  ||||||| ||||||||||||||| ||| ||||||  ||||||||||||    
T  11121584 atagagaaagaaaaaggaagagagagaataagaagataatgtgagtatgagagagaaagtt-gtacaaaagttgt 11121511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 33111881 - 33111928
Alignment:
Q  212 atagagaaagaaaaagaaagagataataagaatataatgtgagtatga 259  Q
    ||||||| ||||| | ||||||| ||||||||||||||||||||||||    
T  33111881 atagagagagaaagaaaaagagagaataagaatataatgtgagtatga 33111928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 46040006 - 46039932
Alignment:
Q  212 atagagaaagaaaaagaaagagata--ataagaatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    ||||||||||||||||||||||| |  |||| |||| |||| |||||||| ||| ||| |||| |||||||||||    
T  46040006 atagagaaagaaaaagaaagagagagaataaaaatacaatgagagtatgagagagaaatttatcacaaaagttgt 46039932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 52368766 - 52368711
Alignment:
Q  215 gagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||||||||| |||||| | ||||||||||| |||||||||| ||| ||||||    
T  52368766 gagaaagaaaaaggaagagagagtaagaatataacgtgagtatgagagagaaagtt 52368711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 3606072 - 3606122
Alignment:
Q  220 agaaaaagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||||| ||||| |||||||||||||| ||||||||| ||| ||||||    
T  3606072 agaaaaagatagagagaataagaatataatatgagtatgatagagaaagtt 3606122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 9988023 - 9987981
Alignment:
Q  242 aatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    |||||||||||||||||||||| |||||| | |||||||||||    
T  9988023 aatataatgtgagtatgaaagagaaagttgtcacaaaagttgt 9987981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 21255756 - 21255813
Alignment:
Q  215 gagaaagaaaaagaaagagataa--taagaatataatgtgagtatgaaagataaagtt 270  Q
    |||| ||||||||||||||| ||  |||||||||||||||||||||| ||| ||||||    
T  21255756 gagagagaaaaagaaagagagaaagtaagaatataatgtgagtatgagagaaaaagtt 21255813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 270
Target Start/End: Original strand, 26214178 - 26214220
Alignment:
Q  228 aaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||||||||||||||| |||||||||||||| |||| ||||||    
T  26214178 aaagagataataagaagataatgtgagtatgtaagagaaagtt 26214220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 30196807 - 30196757
Alignment:
Q  220 agaaaaagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||||  ||||| |||||||||||||||||||||||| ||| ||||||    
T  30196807 agaaaaaggtagagagaataagaatataatgtgagtatgagagagaaagtt 30196757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 270
Target Start/End: Original strand, 34941906 - 34941948
Alignment:
Q  228 aaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||||| |||||||||||||||||||||| ||| ||||||    
T  34941906 aaagagatagtaagaatataatgtgagtatgagagagaaagtt 34941948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 44950417 - 44950462
Alignment:
Q  238 taagaatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    |||||||||||||||||||||||||| |||||| ||| |||||||||    
T  44950417 taagaatataatgtgagtatgaaagagaaagttgtta-aaaagttgt 44950462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 45008163 - 45008205
Alignment:
Q  242 aatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    |||| ||||||||||||| ||| ||||||||||||||||||||    
T  45008163 aatacaatgtgagtatgagagagaaagttattacaaaagttgt 45008205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 47113367 - 47113317
Alignment:
Q  220 agaaaaagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||||||||||| ||||| || ||||||||||||||| ||| ||||||    
T  47113367 agaaaaagaaagagagaataaaaacataatgtgagtatgagagagaaagtt 47113317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 270
Target Start/End: Complemental strand, 47279743 - 47279701
Alignment:
Q  228 aaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||||||||| ||||||||| |||||||||||| ||||||    
T  47279743 aaagagataataaaaatataatgcgagtatgaaagagaaagtt 47279701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 21441739 - 21441679
Alignment:
Q  212 atagagaaagaaaaag--aaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| ||||||||  | ||||||||||||||| |||||||||||||| ||| ||||||    
T  21441739 atagagagagaaaaaggtagagagataataagaatgtaatgtgagtatgagagagaaagtt 21441679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 25672429 - 25672376
Alignment:
Q  226 agaaagagataataagaatataatgtgagtatgaaagataaagttattacaaaa 279  Q
    ||||||||| ||||| || ||||| | |||||||||||||||||| ||||||||    
T  25672429 agaaagagaaaataaaaacataatataagtatgaaagataaagttgttacaaaa 25672376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 25702198 - 25702243
Alignment:
Q  225 aagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||| ||||| | |||||||||||||||||||||| ||||||||||    
T  25702198 aagagagagagagtaagaatataatgtgagtatgagagataaagtt 25702243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 27687507 - 27687556
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttattacaaaa 279  Q
    ||||| ||||| |||||||||||||||||| |||||||||| | ||||||    
T  27687507 agagagaataaaaatataatgtgagtatgagagataaagttgtcacaaaa 27687556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 37275036 - 37275073
Alignment:
Q  245 ataatgtgagtatgaaagataaagttattacaaaagtt 282  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  37275036 ataatgtgagtatgaaagagaaagttatcacaaaagtt 37275073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 39815449 - 39815389
Alignment:
Q  212 atagagaaagaaaaagaaagagata--ataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| ||||||| ||||||| |  ||||||||||||||||||||||| ||| ||||||    
T  39815449 atagagagagaaaaataaagagagagaataagaatataatgtgagtatgagagagaaagtt 39815389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 49596332 - 49596278
Alignment:
Q  214 agagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| ||||| |||||||  ||||||||||||||||||||||| ||| ||||||    
T  49596332 agagaaaaaaaaaaaaagaga--ataagaatataatgtgagtatgagagagaaagtt 49596278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 33669797 - 33669837
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| |||||||||||||||||||||||| ||| ||||||    
T  33669797 agagaaaataagaatataatgtgagtatgagagaaaaagtt 33669837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 37843420 - 37843460
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||||||||| |||||||||||||||| ||| ||||||    
T  37843420 agagataataagagtataatgtgagtatgagagagaaagtt 37843460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 49425820 - 49425780
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| |||||||| ||||||||||||||| ||||||||||    
T  49425820 agagagaataagaaaataatgtgagtatgagagataaagtt 49425780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 174 - 279
Target Start/End: Original strand, 46912722 - 46912836
Alignment:
Q  174 atttgtgacaattttcattttctctcttcttattggtc-------atagagaaagaaaaag--aaagagataataagaatataatgtgagtatgaaagat 264  Q
    ||||| ||||| ||||||||||||||||||||||||||       || |||| ||||||||  ||||||| |||||||||||||||||||||||| |||     
T  46912722 atttgggacaactttcattttctctcttcttattggtccaaaacaatggagagagaaaaaggaaaagagagaataagaatataatgtgagtatgagagag 46912821  T
Q  265 aaagttattacaaaa 279  Q
    |||||| ||| ||||    
T  46912822 aaagttgttaaaaaa 46912836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 272
Target Start/End: Original strand, 31804259 - 31804359
Alignment:
Q  179 tgacaattttcattttctctcttcttattggtca-------tagagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagtta 271  Q
    |||||| ||||||||||| ||||| |||||||||       |||||| ||||||||||||||| |||||||||||||| ||||||||| ||| ||| |||    
T  31804259 tgacaactttcattttctttcttcctattggtcaagaataatagagagagaaaaagaaagagagaataagaatataatctgagtatgagagagaaaatta 31804358  T
Q  272 t 272  Q
    |    
T  31804359 t 31804359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 54801096 - 54801044
Alignment:
Q  215 gagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaa 267  Q
    |||| |||||||| |||||| | ||||||||||||||||||||||||||||||    
T  54801096 gagagagaaaaaggaagagagagtaagaatataatgtgagtatgaaagataaa 54801044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 1795981 - 1796023
Alignment:
Q  242 aatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    |||||||||||||||||| |||||||||||| |||||||||||    
T  1795981 aatataatgtgagtatgagagataaagttatcacaaaagttgt 1796023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 34363625 - 34363583
Alignment:
Q  242 aatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    |||||||||||||||||| |||||||||||| |||||||||||    
T  34363625 aatataatgtgagtatgagagataaagttatcacaaaagttgt 34363583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 50721744 - 50721786
Alignment:
Q  242 aatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    |||||||||||||||||||||| |||||||| |||||||||||    
T  50721744 aatataatgtgagtatgaaagagaaagttatcacaaaagttgt 50721786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 1688396 - 1688456
Alignment:
Q  212 atagagaaagaaaaagaaagagata--ataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| ||||||||||||||| |  ||||||||||||||||||||||| ||| ||||||    
T  1688396 atagagagagaaaaagaaagagagagaataagaatataatgtgagtatgagagagaaagtt 1688456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 270
Target Start/End: Original strand, 4514193 - 4514293
Alignment:
Q  179 tgacaattttcattttctctcttcttattggtc-------atagagaaagaaaaag--aaagagataataagaatataatgtgagtatgaaagataaagt 269  Q
    ||||||||||||||||||||||||| |||||||       ||||| | ||||||||  | ||||| |||| ||||||||||||||||||| ||| |||||    
T  4514193 tgacaattttcattttctctcttctcattggtccaaaacaatagaaagagaaaaaggaagagagagaatatgaatataatgtgagtatgagagagaaagt 4514292  T
Q  270 t 270  Q
    |    
T  4514293 t 4514293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 18874895 - 18874950
Alignment:
Q  215 gagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||| |||||||| |||||| | |||||||||||||||||||||| ||| ||||||    
T  18874895 gagagagaaaaaggaagagagagtaagaatataatgtgagtatgagagagaaagtt 18874950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 30890253 - 30890326
Alignment:
Q  212 atagagaaagaaaaagaa--agagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    ||||||| ||||||||||  ||||| |||||||| ||||| ||||||||| ||| |||||||||| |||||||||    
T  30890253 atagagagagaaaaagaaagagagagaataagaagataatatgagtatgagagaaaaagttatta-aaaagttgt 30890326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 285
Target Start/End: Complemental strand, 46634187 - 46634128
Alignment:
Q  226 agaaagagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgta 285  Q
    ||||||||| | ||| || ||||||||||||||| |||||||||| | ||||||||||||    
T  46634187 agaaagagaaagtaaaaagataatgtgagtatgagagataaagttgtcacaaaagttgta 46634128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 7632461 - 7632503
Alignment:
Q  242 aatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    |||||||||||||||||||||| ||| |||| |||||||||||    
T  7632461 aatataatgtgagtatgaaagagaaaattatcacaaaagttgt 7632503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 24235464 - 24235430
Alignment:
Q  178 gtgacaattttcattttctctcttcttattggtca 212  Q
    ||||||||||| |||||||||||||||||||||||    
T  24235464 gtgacaattttaattttctctcttcttattggtca 24235430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 31574927 - 31574981
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    ||||| ||||| |||||||||||||||||| ||| ||| |||| |||||||||||    
T  31574927 agagaaaataaaaatataatgtgagtatgagagagaaaattatcacaaaagttgt 31574981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 33776989 - 33776939
Alignment:
Q  220 agaaaaagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||||||| |||||||||||  || ||||||||| ||||||||||||||||    
T  33776989 agaaaaaggaagagataatataaagataatgtgaatatgaaagataaagtt 33776939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 35332789 - 35332747
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttat 272  Q
    ||||| |||||||||||||||||||||||| ||| ||||||||    
T  35332789 agagagaataagaatataatgtgagtatgagagagaaagttat 35332747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 45274358 - 45274308
Alignment:
Q  220 agaaaaagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||||||| |||||| ||||| |||||||||||||||||| ||| ||||||    
T  45274358 agaaaaaggaagagagaataacaatataatgtgagtatgagagagaaagtt 45274308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 46567029 - 46566972
Alignment:
Q  215 gagaaagaaaaagaaa--gagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||| |||||||||||  |||||| |||||||||||||||||||||| ||| ||||||    
T  46567029 gagagagaaaaagaaaaggagatagtaagaatataatgtgagtatgagagagaaagtt 46566972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 265
Target Start/End: Complemental strand, 4512751 - 4512706
Alignment:
Q  220 agaaaaagaaagagataataagaatataatgtgagtatgaaagata 265  Q
    ||||||||||||||| ||||| |||||||||| ||||||| |||||    
T  4512751 agaaaaagaaagagaaaataaaaatataatgtaagtatgagagata 4512706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 17363322 - 17363273
Alignment:
Q  222 aaaaagaa-agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||||||| ||||| |||||||||||||||||||||||| ||| ||||||    
T  17363322 aaaaagaagagagagaataagaatataatgtgagtatgagagagaaagtt 17363273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 25725662 - 25725722
Alignment:
Q  212 atagagaaagaaaaagaaagagata--ataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| ||||||||||||||| |  |||| || ||||||||||||||||||| ||||||    
T  25725662 atagagagagaaaaagaaagagagagaataaaaacataatgtgagtatgaaagagaaagtt 25725722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 28676148 - 28676189
Alignment:
Q  238 taagaatataatgtgagtatgaaagataaagttattacaaaa 279  Q
    |||||||||||||||||||||||||| |||||| | ||||||    
T  28676148 taagaatataatgtgagtatgaaagagaaagttgtcacaaaa 28676189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 36812371 - 36812431
Alignment:
Q  212 atagagaaagaaaaag--aaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| ||||||||  | ||||||||||||||| |||||||||||||| ||| ||||||    
T  36812371 atagagagagaaaaaggtagagagataataagaatgtaatgtgagtatgagagagaaagtt 36812431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 37977215 - 37977158
Alignment:
Q  215 gagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagttat 272  Q
    |||| |||||||| |||||| | |||  ||||||||||||||||||||| ||||||||    
T  37977215 gagagagaaaaaggaagagaaagtaaagatataatgtgagtatgaaagaaaaagttat 37977158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 43864136 - 43864076
Alignment:
Q  212 atagagaaagaaaaagaaagaga--taataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| |||||||| ||||||  |||||| |||||||||||||||||| ||| ||||||    
T  43864136 atagagagagaaaaaggaagagagataataaaaatataatgtgagtatgagagaaaaagtt 43864076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 272
Target Start/End: Original strand, 51717255 - 51717312
Alignment:
Q  215 gagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagttat 272  Q
    |||| |||||||| |||||| |||||||||||||||| ||||||| | | ||||||||    
T  51717255 gagagagaaaaaggaagagagaataagaatataatgtaagtatgagaaagaaagttat 51717312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 2193797 - 2193837
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||||||||||||| |||||||||||| ||| ||||||    
T  2193797 agagataataagaatatcatgtgagtatgagagagaaagtt 2193837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 4511897 - 4511857
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| |||||||||||||||||||||||| ||| ||||||    
T  4511897 agagagaataagaatataatgtgagtatgagagagaaagtt 4511857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 4949222 - 4949277
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgtac 286  Q
    ||||| ||||| || ||||||||||||||| ||||||||||| || |||||||||||    
T  4949222 agagagaataaaaacataatgtgagtatgagagataaagtta-tagaaaagttgtac 4949277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 5622526 - 5622486
Alignment:
Q  245 ataatgtgagtatgaaagataaagttattacaaaagttgta 285  Q
    ||||||||||||||||||| |||||| | ||||||||||||    
T  5622526 ataatgtgagtatgaaagagaaagttgtcacaaaagttgta 5622486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 22893951 - 22893911
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| |||||||| ||||||||||||||||||| ||||||    
T  22893951 agagagaataagaagataatgtgagtatgaaagagaaagtt 22893911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 22945619 - 22945579
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| |||||||| ||||||||||||||||||| ||||||    
T  22945619 agagagaataagaagataatgtgagtatgaaagagaaagtt 22945579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 24337350 - 24337397
Alignment:
Q  236 aataagaatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    ||||||| |||||||||||||||| |||||||||| ||| |||||||||    
T  24337350 aataagagtataatgtgagtatgagagataaagttgtta-aaaagttgt 24337397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 285
Target Start/End: Complemental strand, 29525953 - 29525887
Alignment:
Q  220 agaaaaagaaagagata--ataagaatataatgtgagtatgaaagataaagttattacaaaagttgta 285  Q
    ||||||||||||||| |  ||||||||||||| ||||||||| ||| |||||||| | ||||||||||    
T  29525953 agaaaaagaaagagagagaataagaatataatctgagtatgagagagaaagttatca-aaaagttgta 29525887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 30778252 - 30778292
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||||||||| |||||||||||||||| ||| ||||||    
T  30778252 agagataataagagtataatgtgagtatgagagagaaagtt 30778292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 32901412 - 32901372
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||||||||||| | |||||||||||||||| ||||||    
T  32901412 agagataataagaatgtcatgtgagtatgaaagagaaagtt 32901372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 43175052 - 43175012
Alignment:
Q  245 ataatgtgagtatgaaagataaagttattacaaaagttgta 285  Q
    ||||||||||||||| ||| |||||||| ||||||||||||    
T  43175052 ataatgtgagtatgagagagaaagttatcacaaaagttgta 43175012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 55596032 - 55595992
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||||||||||| |||||||||||||| ||| ||||||    
T  55596032 agagataataagaatgtaatgtgagtatgagagagaaagtt 55595992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 174 - 270
Target Start/End: Complemental strand, 3484905 - 3484802
Alignment:
Q  174 atttgtgacaattttcattttctctcttcttattggtc-------atagagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataa 266  Q
    ||||||||||| |||||||||||||||||| |||||||       || |||| |||||||  |||||| |||||||||||||||||||||||| ||| ||    
T  3484905 atttgtgacaactttcattttctctcttctcattggtccaaaacaattgagagagaaaaacgaagagagaataagaatataatgtgagtatgagagagaa 3484806  T
Q  267 agtt 270  Q
    ||||    
T  3484805 agtt 3484802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 44463444 - 44463386
Alignment:
Q  226 agaaagagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    ||||||||| ||||| |||||||||||||||||| ||| |||||||| |||||||||||    
T  44463444 agaaagagaaaataaaaatataatgtgagtatgagagagaaagttatcacaaaagttgt 44463386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 279
Target Start/End: Complemental strand, 23920440 - 23920333
Alignment:
Q  179 tgacaattttcattttctctcttcttattggtc-------atagagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagtta 271  Q
    |||||||||| |||| |||||||| ||||||||       ||||||| |||||||  |||||| | ||||||||||||||||||| |||||| ||||||     
T  23920440 tgacaatttttatttactctcttcctattggtccaaaacaatagagagagaaaaatgaagagagattaagaatataatgtgagtacgaaagagaaagttg 23920341  T
Q  272 ttacaaaa 279  Q
    ||| ||||    
T  23920340 ttaaaaaa 23920333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 26669133 - 26669082
Alignment:
Q  212 atagagaaagaaaaagaaagaga--taataagaatataatgtgagtatgaaa 261  Q
    ||||||| |||||||| ||||||  |||||||||||||||||||||||||||    
T  26669133 atagagagagaaaaaggaagagagataataagaatataatgtgagtatgaaa 26669082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 33074973 - 33074917
Alignment:
Q  215 gagaaagaaaaagaa-agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||||||||||| ||||| ||||| |||||||||||||||||| ||| ||||||    
T  33074973 gagaaagaaaaagaagagagagaataaaaatataatgtgagtatgagagaaaaagtt 33074917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 33971983 - 33971909
Alignment:
Q  215 gagaaagaaaaagaaagagataa--taagaatataatgtgagtatgaaagataaagttattacaaaagttgtacaa 288  Q
    |||| ||||||||||||||| ||  |||||| ||||||||||||||| ||||||| ||  ||||||||||||||||    
T  33971983 gagagagaaaaagaaagagaaaaaataagaagataatgtgagtatgagagataaaatt-gtacaaaagttgtacaa 33971909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 45292999 - 45293070
Alignment:
Q  215 gagaaagaaaaagaaagagata--ataagaatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    |||| ||||||||||||||| |  |||| |||||||||||||||||| ||| |||||| | |||||||||||    
T  45292999 gagagagaaaaagaaagagagagaataaaaatataatgtgagtatgagagagaaagttgtcacaaaagttgt 45293070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 52678565 - 52678605
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  52678565 agagataataagaatataatgtgaatatgaaagagaaagtt 52678605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 288
Target Start/End: Complemental strand, 21481867 - 21481790
Alignment:
Q  212 atagagaaagaaaaagaaagagata--ataagaatataatgtgagtatgaaagataaagttattacaaaagttgtacaa 288  Q
    ||||||| |||||||| |||||| |  ||||||| ||||||||||||||| ||| ||||||  ||||||||||||||||    
T  21481867 atagagacagaaaaaggaagagagagaataagaagataatgtgagtatgagagaaaaagtt-gtacaaaagttgtacaa 21481790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 34900743 - 34900670
Alignment:
Q  212 atagagaaagaaaaagaaagaga--taataagaatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    ||||||| |||||||||||||||  ||||||||| ||||||||||||||| ||| || |||  ||||||||||||    
T  34900743 atagagagagaaaaagaaagagagataataagaaaataatgtgagtatgatagagaaggtt-gtacaaaagttgt 34900670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 46315926 - 46315976
Alignment:
Q  215 gagaaagaaaaagaaagagata--ataagaatataatgtgagtatgaaaga 263  Q
    |||| ||||||||||||||| |  |||||||||||||||||||||||||||    
T  46315926 gagagagaaaaagaaagagagagaataagaatataatgtgagtatgaaaga 46315976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 49361808 - 49361863
Alignment:
Q  215 gagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||| |||||||| |||||| |||||||| ||||||||||||||| ||| ||||||    
T  49361808 gagagagaaaaaggaagagagaataagaagataatgtgagtatgagagaaaaagtt 49361863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 2935499 - 2935556
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgtacaa 288  Q
    ||||| |||||||| ||||||||||||||||||| ||||||  |||||||||| |||||    
T  2935499 agagagaataagaagataatgtgagtatgaaagagaaagtt-gtacaaaagttatacaa 2935556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 21579217 - 21579168
Alignment:
Q  212 atagagaaagaaaaag--aaagagataataagaatataatgtgagtatga 259  Q
    ||||||| ||||||||  | ||||||||||||||||||||||||||||||    
T  21579217 atagagagagaaaaaggtagagagataataagaatataatgtgagtatga 21579168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 26668943 - 26668885
Alignment:
Q  212 atagagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| |||||||  |||||| |||||||||||||||||| ||||||| | ||||||    
T  26668943 atagagagagaaaaaagaagagagaataagaatataatgtgaatatgaaaaaaaaagtt 26668885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 30664586 - 30664529
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgtacaa 288  Q
    ||||| |||||||| ||||||||||||||| ||| ||||||  ||||||||||||||||    
T  30664586 agagaaaataagaagataatgtgagtatgagagagaaagtt-gtacaaaagttgtacaa 30664529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 270
Target Start/End: Original strand, 35425666 - 35425700
Alignment:
Q  236 aataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||||||||||||||||||||||| ||||||||||    
T  35425666 aataagaatataatgtgagtatgagagataaagtt 35425700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 270
Target Start/End: Complemental strand, 43176286 - 43176245
Alignment:
Q  228 aaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||||||||||||| |||||||||||||| ||||||||||    
T  43176286 aaagagataataagaat-taatgtgagtatgagagataaagtt 43176245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 1834609 - 1834549
Alignment:
Q  212 atagagaaagaaaaagaaagagata--ataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| |||||||| |||||| |  ||||||||||||||||||||||| ||| ||||||    
T  1834609 atagagagagaaaaaggaagagagagaataagaatataatgtgagtatgagagagaaagtt 1834549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 7934060 - 7934003
Alignment:
Q  228 aaagagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgta 285  Q
    ||||||| | |||||| ||||||||||||||| ||| ||| |||| ||||||||||||    
T  7934060 aaagagaaagtaagaagataatgtgagtatgagagagaaaattatcacaaaagttgta 7934003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 9027698 - 9027642
Alignment:
Q  228 aaagagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgta 285  Q
    ||||||| |||||||| ||||||||||||| | ||||||||||  |||||||||||||    
T  9027698 aaagagagaataagaagataatgtgagtatcagagataaagtt-gtacaaaagttgta 9027642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 34064108 - 34064145
Alignment:
Q  245 ataatgtgagtatgaaagataaagttattacaaaagtt 282  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  34064108 ataatgtgagtatgagagataaagttgttacaaaagtt 34064145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 44910851 - 44910814
Alignment:
Q  175 tttgtgacaattttcattttctctcttcttattggtca 212  Q
    |||||||||| || ||||||||||||||||||||||||    
T  44910851 tttgtgacaacttacattttctctcttcttattggtca 44910814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 16295567 - 16295493
Alignment:
Q  212 atagagaaagaaaaagaaagagataa--taagaatataatgtgagtatgaaagataaagttattacaaaagttgta 285  Q
    ||||||| |||||||| |||||| ||  ||| |||||||||||||||||| ||| ||||||  |||||||||||||    
T  16295567 atagagagagaaaaaggaagagagaaaataaaaatataatgtgagtatgagagagaaagtt-gtacaaaagttgta 16295493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 35272110 - 35272070
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| ||||||| |||||| ||||||||||||||||||||    
T  35272110 agagaaaataagagtataatatgagtatgaaagataaagtt 35272070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 37134591 - 37134643
Alignment:
Q  227 gaaagagataataagaatataatgtgagtatgaaagataaagttattacaaaa 279  Q
    |||||||| |||||||||||||| ||| ||||||||| |||||| ||| ||||    
T  37134591 gaaagagaaaataagaatataatatgaatatgaaagagaaagttgttaaaaaa 37134643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 37323810 - 37323778
Alignment:
Q  179 tgacaattttcattttctctcttcttattggtc 211  Q
    ||||||||||||||||||| |||||||||||||    
T  37323810 tgacaattttcattttctcccttcttattggtc 37323778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 40785687 - 40785727
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| |||||||||||||||||||||| ||| ||||||    
T  40785687 agagatagtaagaatataatgtgagtatgagagagaaagtt 40785727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 41957598 - 41957558
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| ||||| || ||||||||||||||||||||||||||    
T  41957598 agagagaataaaaacataatgtgagtatgaaagataaagtt 41957558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 43499545 - 43499581
Alignment:
Q  225 aagaaagagataataagaatataatgtgagtatgaaa 261  Q
    |||||||||| | ||||||||||||||||||||||||    
T  43499545 aagaaagagagagtaagaatataatgtgagtatgaaa 43499581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 43900745 - 43900785
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| |||||||||||||||||||||||| ||| ||||||    
T  43900745 agagagaataagaatataatgtgagtatgagagagaaagtt 43900785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 44972779 - 44972732
Alignment:
Q  236 aataagaatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    ||||| |||||||||||||||||| ||||||||||  ||||||||||||    
T  44972779 aataaaaatataatgtgagtatgagagataaagtt-gtacaaaagttgt 44972732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 12208525 - 12208468
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgtacaa 288  Q
    ||||| |||||||| ||||||||||||||||||| ||||||| ||||||||||||||||    
T  12208525 agagagaataagaaaataatgtgagtatgaaagagaaagtta-tacaaaagttgtacaa 12208468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 270
Target Start/End: Original strand, 2308252 - 2308350
Alignment:
Q  179 tgacaattttcattttctctcttcttattggtca-------tagagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||||| |||||||||||||||||| ||||| ||       |||||| | |||||  |||||| |||||||||||||||||||||||| ||||||||||    
T  2308252 tgacaactttcattttctctcttctcattggccaaaaataatagagagaaaaaaatgaagagagaataagaatataatgtgagtatgagagataaagtt 2308350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 1096331 - 1096388
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgtacaa 288  Q
    |||||||||| ||| ||||||||||||||| ||||||| ||| ||||||||||||||||    
T  1096331 agagataataggaagataatgtgagtatgagagataaaatta-tacaaaagttgtacaa 1096388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 270
Target Start/End: Complemental strand, 13881180 - 13881138
Alignment:
Q  228 aaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| |||||||| ||||||||||||||||||||||||||    
T  13881180 aaagagagaataagaagataatgtgagtatgaaagataaagtt 13881138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 270
Target Start/End: Complemental strand, 14021305 - 14021263
Alignment:
Q  228 aaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| |||||||| ||||||||||||||||||||||||||    
T  14021305 aaagagagaataagaagataatgtgagtatgaaagataaagtt 14021263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 25994249 - 25994212
Alignment:
Q  174 atttgtgacaattttcattttctctcttcttattggtc 211  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  25994249 atttgtgacaactttcattttctctcttcttattggtc 25994212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 36795809 - 36795773
Alignment:
Q  234 ataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||||||||||||||||||||||||||||| ||||||    
T  36795809 ataataagaatataatgtgagtatgaaagagaaagtt 36795773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 17999839 - 17999773
Alignment:
Q  220 agaaaaagaaagagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgtaca 287  Q
    |||||||| |||||| ||||| || ||||||||||||||| ||| ||||||  |||||||||||||||    
T  17999839 agaaaaaggaagagagaataaaaagataatgtgagtatgagagagaaagtt-gtacaaaagttgtaca 17999773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 546313 - 546427
Alignment:
Q  179 tgacaattttcattttctctcttcttattggtc-------atagagaaagaaaaagaaagagata--ataagaatataatgtgagtatgaaagataaagt 269  Q
    |||||| ||| |||||||||||||| |||||||       ||||||| |||||||| |||||| |  |||| |||||||||||||||||| ||| |||||    
T  546313 tgacaacttttattttctctcttctcattggtccaaaacaatagagagagaaaaaggaagagagagaataaaaatataatgtgagtatgagagagaaagt 546412  T
Q  270 tattacaaaagttgta 285  Q
    | ||| ||||||||||    
T  546413 tgtta-aaaagttgta 546427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 4263835 - 4263892
Alignment:
Q  215 gagaaagaaaaagaaagagataa--taagaatataatgtgagtatgaaagataaagtt 270  Q
    |||| |||||||| |||||| ||  |||||||||||||||||||||||||| ||||||    
T  4263835 gagagagaaaaaggaagagagaaagtaagaatataatgtgagtatgaaagagaaagtt 4263892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 5852557 - 5852500
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgtacaa 288  Q
    |||||||||||||| ||||||||||||||| ||| || |||  ||||||||||||||||    
T  5852557 agagataataagaaaataatgtgagtatgagagagaaggtt-gtacaaaagttgtacaa 5852500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 8757644 - 8757587
Alignment:
Q  215 gagaaagaaaaagaaagagata--ataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||| ||||||||||||||| |  ||||||| ||||||||||||||| ||||||||||    
T  8757644 gagagagaaaaagaaagagagagaataagaagataatgtgagtatgagagataaagtt 8757587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 270
Target Start/End: Complemental strand, 35965652 - 35965618
Alignment:
Q  236 aataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||||||||||||||||||||||||||| ||||||    
T  35965652 aataagaatataatgtgagtatgaaagagaaagtt 35965618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 263
Target Start/End: Original strand, 38912575 - 38912620
Alignment:
Q  220 agaaaaagaaagagata--ataagaatataatgtgagtatgaaaga 263  Q
    |||||||||||||||||  |||| ||||||||||||||||||||||    
T  38912575 agaaaaagaaagagatagaataaaaatataatgtgagtatgaaaga 38912620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 270
Target Start/End: Complemental strand, 42554861 - 42554819
Alignment:
Q  228 aaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| |||||||||||||||||||||||| ||| ||||||    
T  42554861 aaagagagaataagaatataatgtgagtatgagagagaaagtt 42554819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 5191662 - 5191722
Alignment:
Q  212 atagagaaagaaaaagaaagagataa--taagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| ||||| || |||||||||  |||||||||||||||||||||| ||| ||||||    
T  5191662 atagagagagaaagaggaagagataaattaagaatataatgtgagtatgagagagaaagtt 5191722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 7497959 - 7498019
Alignment:
Q  212 atagagaaagaaaaagaaa--gagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| |||||||||||  |||| ||||| |||||||||||||||||| ||| ||||||    
T  7497959 atagagagagaaaaagaaatagagagaataaaaatataatgtgagtatgagagagaaagtt 7498019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 11728100 - 11728164
Alignment:
Q  222 aaaaagaa-agagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgtac 286  Q
    |||||||| ||||| ||||| || ||||||||||||||||||| ||||||  ||||||||||||||    
T  11728100 aaaaagaagagagagaataaaaacataatgtgagtatgaaagagaaagtt-gtacaaaagttgtac 11728164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 25801796 - 25801841
Alignment:
Q  225 aagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||| ||||| ||||||| |||||||||||||||| ||||||||||    
T  25801796 aagagagagagaataagagtataatgtgagtatgagagataaagtt 25801841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 26809589 - 26809536
Alignment:
Q  215 gagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaag 268  Q
    |||| ||||||||||||||| ||||| || ||||||||||||||| ||| ||||    
T  26809589 gagagagaaaaagaaagagagaataaaaacataatgtgagtatgagagagaaag 26809536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 31635778 - 31635838
Alignment:
Q  212 atagagaaagaaaaagaaagag--ataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| |||||||| |||||  |||||||||| ||||||||||||||| ||| ||||||    
T  31635778 atagagagagaaaaaggaagagagataataagaagataatgtgagtatgagagagaaagtt 31635838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 36133057 - 36133008
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttattacaaaa 279  Q
    ||||| ||||||| |||||||||||||||| |||||||||| | ||||||    
T  36133057 agagagaataagagtataatgtgagtatgagagataaagttgtcacaaaa 36133008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 38600917 - 38600857
Alignment:
Q  212 atagagaaagaaaaagaaagagataa--taagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| ||||||||||||||| |   |||||||||||||||||||||| ||| ||||||    
T  38600917 atagagagagaaaaagaaagagaaagattaagaatataatgtgagtatgagagagaaagtt 38600857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 39147851 - 39147794
Alignment:
Q  228 aaagagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgta 285  Q
    ||||||| | ||| || ||||||||| ||||||||| |||||| ||||||||||||||    
T  39147851 aaagagaaagtaaaaacataatgtgaatatgaaagagaaagttgttacaaaagttgta 39147794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 5167713 - 5167757
Alignment:
Q  215 gagaaagaaaaagaaagagataataagaatataatgtgagtatga 259  Q
    |||| |||||||| |||||| | ||||||||||||||||||||||    
T  5167713 gagagagaaaaaggaagagagagtaagaatataatgtgagtatga 5167757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 11126547 - 11126495
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttattacaaaagtt 282  Q
    ||||| |||||||| ||||||||||||||| ||| ||||||  ||||||||||    
T  11126547 agagagaataagaagataatgtgagtatgagagagaaagtttgtacaaaagtt 11126495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 14797638 - 14797678
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||||||||||| |||||||||||||| ||| ||||||    
T  14797638 agagataataagaatgtaatgtgagtatgagagagaaagtt 14797678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 270
Target Start/End: Original strand, 36763520 - 36763552
Alignment:
Q  238 taagaatataatgtgagtatgaaagataaagtt 270  Q
    |||||||||||||||||||||||||| ||||||    
T  36763520 taagaatataatgtgagtatgaaagagaaagtt 36763552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 40951290 - 40951247
Alignment:
Q  215 gagaaagaaaaagaaagagataataagaatataatgtgagtatga 259  Q
    |||| |||||||||| |||||| ||||||||||||||||||||||    
T  40951290 gagagagaaaaagaa-gagatagtaagaatataatgtgagtatga 40951247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 288
Target Start/End: Original strand, 48639353 - 48639428
Alignment:
Q  212 atagagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgtacaa 288  Q
    ||||||| |||||||| |||||| |||||||| ||||||||||||||| ||| || |||  ||||||||||||||||    
T  48639353 atagagagagaaaaaggaagagagaataagaagataatgtgagtatgagagagaaggtt-gtacaaaagttgtacaa 48639428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 270
Target Start/End: Complemental strand, 17500833 - 17500740
Alignment:
Q  186 tttcattttctctcttcttattggtc-------atagagaaagaaaaa-gaa-agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||||||||||||||||||||||       || |||| ||||||| ||| ||||| |||||||||||||||||||||||| ||||||||||    
T  17500833 tttcattttctctcttcttattggtccaaaacaatggagagagaaaaatgaagagagagaataagaatataatgtgagtatgagagataaagtt 17500740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 270
Target Start/End: Original strand, 17552381 - 17552474
Alignment:
Q  186 tttcattttctctcttcttattggtc-------atagagaaagaaaaa-gaa-agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||||||||||||||||||||||       || |||| ||||||| ||| ||||| |||||||||||||||||||||||| ||||||||||    
T  17552381 tttcattttctctcttcttattggtccaaaacaatggagagagaaaaatgaagagagagaataagaatataatgtgagtatgagagataaagtt 17552474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 21839104 - 21839161
Alignment:
Q  215 gagaaagaaaaagaaagag--ataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||| ||||||||||||||  ||||||||| |||||||||||||||| ||||||||||    
T  21839104 gagagagaaaaagaaagagagataataagagtataatgtgagtatgagagataaagtt 21839161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 2756917 - 2756957
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  2756917 agagataataagaatgtaatgtgagtatgagagataaagtt 2756957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 7295534 - 7295478
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgtac 286  Q
    ||||| |||||||||||||||||||||||| ||| |||||| || ||||| ||||||    
T  7295534 agagagaataagaatataatgtgagtatgagagagaaagttgttccaaaaattgtac 7295478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 13437299 - 13437228
Alignment:
Q  212 atagagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    ||||||||| |||||| |||||| |||||||| | ||||||||||||| ||| |||||| || ||||||||||    
T  13437299 atagagaaacaaaaaggaagagagaataagaacacaatgtgagtatgagagaaaaagttgtt-caaaagttgt 13437228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 37392126 - 37392086
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  37392126 agagaaaataagaatataatgtgagtatgagagataaagtt 37392086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 5724121 - 5724067
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgta 285  Q
    ||||| |||||||||||||||||||||||| ||| |||||| ||| ||||||||||    
T  5724121 agagaaaataagaatataatgtgagtatgagagagaaagttgtta-aaaagttgta 5724067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 10619672 - 10619727
Alignment:
Q  215 gagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||| |||||||| |||||| | |||||||||||||||||||||| ||| ||||||    
T  10619672 gagagagaaaaaggaagagagagtaagaatataatgtgagtatgagagagaaagtt 10619727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 28110055 - 28110000
Alignment:
Q  215 gagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||| |||||| |||||||| ||||| |||||||||||||||||  ||||||||||    
T  28110055 gagagagaaaatgaaagagagaataaaaatataatgtgagtatgtgagataaagtt 28110000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 34304648 - 34304695
Alignment:
Q  212 atagagaaagaaaaagaaagagataataagaatataatgtgagtatga 259  Q
    ||||||||||||||||  ||||| | ||||||||||||||||||||||    
T  34304648 atagagaaagaaaaagggagagagagtaagaatataatgtgagtatga 34304695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 17002408 - 17002366
Alignment:
Q  242 aatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    |||||||||||||||||||||| |||||||| | |||||||||    
T  17002408 aatataatgtgagtatgaaagagaaagttatcataaaagttgt 17002366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 270
Target Start/End: Original strand, 25614807 - 25614849
Alignment:
Q  228 aaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||||||||||||| | |||||||||||||||| ||||||    
T  25614807 aaagagataataagaatgtcatgtgagtatgaaagagaaagtt 25614849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 37899407 - 37899353
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    ||||| ||| ||||||| |||||||||||| |||||||||| | |||||||||||    
T  37899407 agagaaaatgagaatatgatgtgagtatgagagataaagttgtcacaaaagttgt 37899353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 45154536 - 45154570
Alignment:
Q  238 taagaatataatgtgagtatgaaagataaagttat 272  Q
    |||||||||||||||||||||||||| ||||||||    
T  45154536 taagaatataatgtgagtatgaaagagaaagttat 45154570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 47954101 - 47954143
Alignment:
Q  242 aatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    |||||||||||||||||||||| |||||| | |||||||||||    
T  47954101 aatataatgtgagtatgaaagagaaagttgtcacaaaagttgt 47954143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 9055370 - 9055310
Alignment:
Q  212 atagagaaagaaaaag--aaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| ||||||||  | ||||||||||||||| |||||||||||||| ||| ||||||    
T  9055370 atagagagagaaaaaggtagagagataataagaatgtaatgtgagtatgagagagaaagtt 9055310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 16567399 - 16567366
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaaga 263  Q
    ||||| ||||||||||||||||||||||||||||    
T  16567399 agagagaataagaatataatgtgagtatgaaaga 16567366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 16598263 - 16598296
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaaga 263  Q
    ||||| ||||||||||||||||||||||||||||    
T  16598263 agagagaataagaatataatgtgagtatgaaaga 16598296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 27331006 - 27331055
Alignment:
Q  222 aaaaagaa-agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||||||| ||||| |||||||| ||||||||||||||| ||||||||||    
T  27331006 aaaaagaagagagagaataagaagataatgtgagtatgatagataaagtt 27331055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 46148249 - 46148212
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaa 267  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  46148249 agagagaataagaatataatgtgagtatgagagataaa 46148212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 4971373 - 4971333
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| |||||||||||||||||||||| ||| ||||||    
T  4971373 agagatagtaagaatataatgtgagtatgagagagaaagtt 4971333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 27866525 - 27866565
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| |||||||| ||||||||||||||| ||||||||||    
T  27866525 agagagaataagaagataatgtgagtatgagagataaagtt 27866565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 36186864 - 36186904
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| |||||||||||||||||||||||| ||| ||||||    
T  36186864 agagagaataagaatataatgtgagtatgagagagaaagtt 36186904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 37385219 - 37385274
Alignment:
Q  228 aaagagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    ||||||||||||||||| | |||||||||||| ||| ||||||  ||||||||||||    
T  37385219 aaagagataataagaatgtcatgtgagtatgagagagaaagtt-gtacaaaagttgt 37385274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 41666995 - 41666955
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| |||||||| ||||||||||||||| ||||||||||    
T  41666995 agagagaataagaagataatgtgagtatgagagataaagtt 41666955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 41985080 - 41985128
Alignment:
Q  222 aaaaagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||||||||| |||||||  ||||||||||||||| ||| ||||||    
T  41985080 aaaaagaaagagaaaataagagaataatgtgagtatgagagagaaagtt 41985128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 43107709 - 43107653
Alignment:
Q  214 agagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| || |||| ||||| | ||| |||||||||||||||||| ||||||||||    
T  43107709 agagaaaaaagaagagagagagagtaaaaatataatgtgagtatgagagataaagtt 43107653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 279
Target Start/End: Complemental strand, 7693458 - 7693349
Alignment:
Q  179 tgacaattttcattttctctcttcttattggtc-------atagagaaagaaaaagaaagagata--ataagaatataatgtgagtatgaaagataaagt 269  Q
    |||||||||| ||||||||||||||||||||||       || |||| |||||||| |||||| |  ||||||||||||||||||||||| ||| |||||    
T  7693458 tgacaatttttattttctctcttcttattggtccaaaacaatggagagagaaaaaggaagagagagaataagaatataatgtgagtatgagagagaaagt 7693359  T
Q  270 tattacaaaa 279  Q
    | ||| ||||    
T  7693358 tgttaaaaaa 7693349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 9188886 - 9188972
Alignment:
Q  191 ttttctctcttcttattggtcata-------gagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||||||||||||||||||||| |       |||| |||||||| |||||| | |||||||||||||||||||||| ||||||||||    
T  9188886 ttttctctcttcttattggtcaaaaataatggagagagaaaaaggaagagagagtaagaatataatgtgagtatgagagataaagtt 9188972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 14095014 - 14094954
Alignment:
Q  212 atagagaaagaaaaag--aaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| ||||||||  | |||||||||||||||||||||||||||||| ||| ||||||    
T  14095014 atagagagagaaaaaggtagagagataataagaatataatgtgagtatgagagagaaagtt 14094954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 285
Target Start/End: Complemental strand, 2333464 - 2333394
Alignment:
Q  214 agagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgta 285  Q
    ||||||| ||||| ||| ||| ||||| |||||||||| ||||||||||| |||||||| | ||||||||||    
T  2333464 agagaaaaaaaaaaaaaaagagaataaaaatataatgtaagtatgaaagagaaagttatca-aaaagttgta 2333394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 22422242 - 22422176
Alignment:
Q  222 aaaaagaa-agagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgtacaa 288  Q
    |||||||| ||||| |||||||| ||||||||||||||| ||| ||||||  ||||||||||||||||    
T  22422242 aaaaagaagagagagaataagaagataatgtgagtatgagagagaaagtt-gtacaaaagttgtacaa 22422176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 12151845 - 12151902
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgtacaa 288  Q
    ||||| |||||||| ||||||||||||||| ||| | ||||| ||||||||||||||||    
T  12151845 agagagaataagaagataatgtgagtatgagagagagagtta-tacaaaagttgtacaa 12151902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 9395316 - 9395365
Alignment:
Q  222 aaaaagaa-agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||||||| ||||| |||||||| ||||||||||||||||||| ||||||    
T  9395316 aaaaagaagagagagaataagaagataatgtgagtatgaaagagaaagtt 9395365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 12177641 - 12177600
Alignment:
Q  238 taagaatataatgtgagtatgaaagataaagttattacaaaa 279  Q
    |||||||||||||||||||||||||| |||||| | ||||||    
T  12177641 taagaatataatgtgagtatgaaagagaaagttgtcacaaaa 12177600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 30253301 - 30253350
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttattacaaaa 279  Q
    ||||| |||||||||||||||||||||||| ||| |||||| ||| ||||    
T  30253301 agagagaataagaatataatgtgagtatgagagagaaagttgttaaaaaa 30253350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 35077190 - 35077153
Alignment:
Q  247 aatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  35077190 aatgtgagtatgaaagataaagttgttataaaagttgt 35077153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 5080570 - 5080610
Alignment:
Q  245 ataatgtgagtatgaaagataaagttattacaaaagttgta 285  Q
    ||||||||||||||||||| |||||| | ||||||||||||    
T  5080570 ataatgtgagtatgaaagagaaagttgtcacaaaagttgta 5080610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 16337922 - 16337962
Alignment:
Q  242 aatataatgtgagtatgaaagataaagttattacaaaagtt 282  Q
    |||||||||||||||||| ||| |||||| |||||||||||    
T  16337922 aatataatgtgagtatgagagagaaagttgttacaaaagtt 16337962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 23633311 - 23633351
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| |||||||||||||||||||||||| ||| ||||||    
T  23633311 agagagaataagaatataatgtgagtatgagagagaaagtt 23633351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 25561928 - 25561968
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| |||||||| ||||||||||||||| ||||||||||    
T  25561928 agagagaataagaagataatgtgagtatgagagataaagtt 25561968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 25567478 - 25567518
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| |||||||| ||||||||||||||| ||||||||||    
T  25567478 agagaaaataagaagataatgtgagtatgagagataaagtt 25567518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 26101442 - 26101482
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| |||||||| ||||||||||||||| ||||||||||    
T  26101442 agagagaataagaagataatgtgagtatgagagataaagtt 26101482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 270
Target Start/End: Original strand, 10658 - 10763
Alignment:
Q  174 atttgtgacaattttcattttctctcttcttattggtcata-------gagaaagaaaaag--aaagagataataagaatataatgtgagtatgaaagat 264  Q
    |||| |||||| ||| |||||||||||||| |||||||| |       |||| ||||||||  ||||||| |||||||||||||||||||||||| |||     
T  10658 atttttgacaacttttattttctctcttctcattggtcaaaaacatttgagagagaaaaaggaaaagagagaataagaatataatgtgagtatgagagaa 10757  T
Q  265 aaagtt 270  Q
    ||||||    
T  10758 aaagtt 10763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 199349 - 199309
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||||||||||||||||||||||||||||| ||| ||||||    
T  199349 agagataataagaatataatgtgagtatgagagagaaagtt 199309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 145144 - 145087
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgtacaa 288  Q
    |||||||||||||| ||||||||||||||| ||| || |||  ||||||||||||||||    
T  145144 agagataataagaagataatgtgagtatgagagagaatgtt-gtacaaaagttgtacaa 145087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 270
Target Start/End: Original strand, 6849257 - 6849289
Alignment:
Q  238 taagaatataatgtgagtatgaaagataaagtt 270  Q
    |||||||||||||||||||||||||||||||||    
T  6849257 taagaatataatgtgagtatgaaagataaagtt 6849289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 295649 - 295587
Alignment:
Q  212 atagagaaagaaaaagaaagaga--taataagaatataatgtgagtatgaaagataaagttat 272  Q
    ||||||| |||||||| ||||||  ||||||||| ||||||||||||||| ||| ||||||||    
T  295649 atagagagagaaaaaggaagagagataataagaaaataatgtgagtatgagagagaaagttat 295587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 14548796 - 14548851
Alignment:
Q  215 gagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||| |||||||| |||||| | |||||||||||||||||||||| ||| ||||||    
T  14548796 gagagagaaaaaggaagagagagtaagaatataatgtgagtatgagagagaaagtt 14548851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 45081170 - 45081123
Alignment:
Q  212 atagagaaagaaaaagaaagagataataagaatataatgtgagtatga 259  Q
    ||||||| ||||||||||||||| | |||||||||||||||| |||||    
T  45081170 atagagagagaaaaagaaagagagattaagaatataatgtgaatatga 45081123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 270
Target Start/End: Complemental strand, 18538460 - 18538418
Alignment:
Q  228 aaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||    
T  18538460 aaagagataataagagtattatgtgagtatgagagataaagtt 18538418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 21649156 - 21649213
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgtacaa 288  Q
    ||||| |||| ||| ||||||||||||||||||| ||||||  ||||||||||||||||    
T  21649156 agagagaataggaagataatgtgagtatgaaagagaaagtt-gtacaaaagttgtacaa 21649213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 270
Target Start/End: Original strand, 29910206 - 29910240
Alignment:
Q  236 aataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||||||||||||||||||||||||||| ||||||    
T  29910206 aataagaatataatgtgagtatgaaagagaaagtt 29910240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 30608680 - 30608738
Alignment:
Q  214 agagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagttat 272  Q
    ||||| ||||||||||||| | ||||| || ||||||||| ||||||||| ||||||||    
T  30608680 agagagagaaaaagaaagaaagaataaaaacataatgtgaatatgaaagagaaagttat 30608738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 33415679 - 33415732
Alignment:
Q  212 atagagaaagaaaaag--aaagagataataagaatataatgtgagtatgaaaga 263  Q
    ||||||| ||||||||  ||||||||||||| |||||||||||||||| |||||    
T  33415679 atagagagagaaaaaggaaaagagataataaaaatataatgtgagtataaaaga 33415732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 34810630 - 34810684
Alignment:
Q  231 gagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgta 285  Q
    |||| |||||||||||||| ||| ||||| |||||||||||| |||| |||||||    
T  34810630 gagagaataagaatataatatgaatatgagagataaagttatcacaagagttgta 34810684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 285
Target Start/End: Original strand, 38578369 - 38578407
Alignment:
Q  247 aatgtgagtatgaaagataaagttattacaaaagttgta 285  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  38578369 aatgtgagtatgaaagataaagttatcacaaaaattgta 38578407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 40459732 - 40459790
Alignment:
Q  212 atagagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| | ||| ||||||||| ||||| |||||||||||||||||| ||| ||||||    
T  40459732 atagagagaaaaagagaaagagagaataaaaatataatgtgagtatgagagagaaagtt 40459790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 9431253 - 9431313
Alignment:
Q  212 atagagaaagaaaaagaaagag--ataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| ||||||||| ||||  ||||||||||| |||||||||||||| ||| ||||||    
T  9431253 atagagagagaaaaagatagagagataataagaatgtaatgtgagtatgagagagaaagtt 9431313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 33863236 - 33863273
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaa 267  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  33863236 agagagaataagaatataatgtgagtatgagagataaa 33863273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 259
Target Start/End: Complemental strand, 40997740 - 40997711
Alignment:
Q  230 agagataataagaatataatgtgagtatga 259  Q
    ||||||||||||||||||||||||||||||    
T  40997740 agagataataagaatataatgtgagtatga 40997711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 154436 - 154400
Alignment:
Q  176 ttgtgacaattttcattttctctcttcttattggtca 212  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  154436 ttgtgacaactttcattttctctctttttattggtca 154400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 4054289 - 4054329
Alignment:
Q  245 ataatgtgagtatgaaagataaagttattacaaaagttgta 285  Q
    ||||||||| |||||||||||||||||| ||| ||||||||    
T  4054289 ataatgtgaatatgaaagataaagttatcacagaagttgta 4054329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 5742645 - 5742700
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgtac 286  Q
    ||||| ||||| || ||||||||||||||| ||||||||||  ||||||||||||||    
T  5742645 agagagaataaaaacataatgtgagtatgagagataaagtt-gtacaaaagttgtac 5742700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 8671555 - 8671595
Alignment:
Q  242 aatataatgtgagtatgaaagataaagttattacaaaagtt 282  Q
    ||||||||| |||||||| ||| ||||||||||||||||||    
T  8671555 aatataatgcgagtatgagagagaaagttattacaaaagtt 8671595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 25987789 - 25987829
Alignment:
Q  245 ataatgtgagtatgaaagataaagttattacaaaagttgta 285  Q
    ||||||||||||||| |||||||||| | ||||||||||||    
T  25987789 ataatgtgagtatgagagataaagttgtcacaaaagttgta 25987829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 27630980 - 27630940
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| |||||||||||||||||||||||| ||| ||||||    
T  27630980 agagagaataagaatataatgtgagtatgagagagaaagtt 27630940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 38174221 - 38174261
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| |||||||||||||||||||||||| ||| ||||||    
T  38174221 agagagaataagaatataatgtgagtatgagagagaaagtt 38174261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 43590779 - 43590735
Alignment:
Q  228 aaagagataataagaatataatgtgagtatgaaagataaagttat 272  Q
    ||||||| |||||||| ||||||||||||||| ||| ||||||||    
T  43590779 aaagagagaataagaagataatgtgagtatgagagagaaagttat 43590735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 3031911 - 3031860
Alignment:
Q  236 aataagaatataatgtgagtatgaaagataaagttattacaaaagttgtacaa 288  Q
    |||||||| ||||||||||||||||||| ||||||  ||||||||||||||||    
T  3031911 aataagaagataatgtgagtatgaaagagaaagtt-gtacaaaagttgtacaa 3031860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 31329114 - 31329154
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||||||||||||||||||||||||||||| ||| ||||||    
T  31329114 agagataataagaatataatgtgagtatgatagagaaagtt 31329154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 41460199 - 41460159
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  41460199 agagagaataagaatataatgtgagtatgagagataaagtt 41460159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 1108064 - 1108010
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgta 285  Q
    ||||||||||| || ||||||||||||||| ||||||||||  |||||||||||||    
T  1108064 agagataataaaaacataatgtgagtatgagagataaagtt-gtacaaaagttgta 1108010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 285
Target Start/End: Original strand, 7287189 - 7287232
Alignment:
Q  242 aatataatgtgagtatgaaagataaagttattacaaaagttgta 285  Q
    |||||||||||||||||||||| |||||| | ||||||||||||    
T  7287189 aatataatgtgagtatgaaagagaaagttgtcacaaaagttgta 7287232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 285
Target Start/End: Original strand, 28306128 - 28306175
Alignment:
Q  238 taagaatataatgtgagtatgaaagataaagttattacaaaagttgta 285  Q
    |||||| ||||||||||||||| |||||||||| | ||||||||||||    
T  28306128 taagaagataatgtgagtatgagagataaagttgtcacaaaagttgta 28306175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 1274425 - 1274387
Alignment:
Q  246 taatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  1274425 taatgtgagtatgaaagataaagttgtcacaaaagttgt 1274387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 3960140 - 3960197
Alignment:
Q  215 gagaaagaaaaagaaagagata--ataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||| ||||||||||||||| |  ||||||||||||||||||||||| | ||||||||    
T  3960140 gagagagaaaaagaaagagagagaataagaatataatgtgagtatgagatataaagtt 3960197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 4088515 - 4088473
Alignment:
Q  242 aatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    |||||||||||||||||||||| |||||| | |||||||||||    
T  4088515 aatataatgtgagtatgaaagagaaagttgtcacaaaagttgt 4088473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 6964337 - 6964394
Alignment:
Q  215 gagaaagaaaaagaaagagata--ataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||||||||| ||||||||  |||||| |||||||||||||||| ||| ||||||    
T  6964337 gagaaagaaaaaggaagagatagaataagagtataatgtgagtatgagagagaaagtt 6964394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 9168152 - 9168206
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    ||||| ||||| |||||||||||||||||||||| ||| || | |||||||||||    
T  9168152 agagaaaataaaaatataatgtgagtatgaaagagaaaattgtcacaaaagttgt 9168206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 9940149 - 9940099
Alignment:
Q  220 agaaaaagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||||||||||| | |||||| ||||||||||||||| ||| ||||||    
T  9940149 agaaaaagaaagagagagtaagaagataatgtgagtatgagagagaaagtt 9940099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 16690571 - 16690529
Alignment:
Q  242 aatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    |||||||||||||||||||||| |||||| | |||||||||||    
T  16690571 aatataatgtgagtatgaaagagaaagttgtcacaaaagttgt 16690529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 18729277 - 18729334
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgtacaa 288  Q
    ||||| |||||||| ||||||||||||||||||| || |||  ||||||||||||||||    
T  18729277 agagagaataagaagataatgtgagtatgaaagagaaggtt-gtacaaaagttgtacaa 18729334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 31024973 - 31025042
Alignment:
Q  212 atagagaaagaaaaagaaaga--gataataagaatataatgtgagtatgaaagataaagttattacaaaa 279  Q
    ||||||| |||||||| ||||  || |||||||||||||||||||||||| ||| |||||| ||| ||||    
T  31024973 atagagagagaaaaaggaagaaagagaataagaatataatgtgagtatgagagagaaagttgttaaaaaa 31025042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 41173336 - 41173282
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    ||||| ||| ||||||| |||||||||||| ||| |||||| |||||||||||||    
T  41173336 agagaaaatgagaatatgatgtgagtatgagagagaaagttgttacaaaagttgt 41173282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 884529 - 884476
Alignment:
Q  226 agaaagagataataagaatataatgtgagtatgaaagataaagttattacaaaa 279  Q
    ||||||||| | ||| |||||||||||||||||| |||||||||| | ||||||    
T  884529 agaaagagaaagtaaaaatataatgtgagtatgagagataaagttgtcacaaaa 884476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 6931061 - 6931098
Alignment:
Q  245 ataatgtgagtatgaaagataaagttattacaaaagtt 282  Q
    |||||||||||||||||||||||||| || ||||||||    
T  6931061 ataatgtgagtatgaaagataaagttgttgcaaaagtt 6931098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 18638813 - 18638850
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaa 267  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  18638813 agagagaataagaatataatgtgagtatgagagataaa 18638850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 32873117 - 32873177
Alignment:
Q  212 atagagaaagaaaaag--aaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| ||||||||  | ||||||||||| |||||||||||||||||| ||| ||||||    
T  32873117 atagagagagaaaaaggtagagagataataaaaatataatgtgagtatgatagagaaagtt 32873177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 33743301 - 33743361
Alignment:
Q  212 atagagaaagaaaaagaaagagata--ataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||||| ||||||||||||||| |  ||||||||||||||| ||||||| ||| ||||||    
T  33743301 atagagagagaaaaagaaagagagagaataagaatataatgtaagtatgagagagaaagtt 33743361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 582840 - 582884
Alignment:
Q  215 gagaaagaaaaagaaagagataataagaatataatgtgagtatga 259  Q
    |||| |||||||| |||||| |||||||||||||| |||||||||    
T  582840 gagagagaaaaaggaagagagaataagaatataatatgagtatga 582884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 2117612 - 2117652
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| |||||||||||||||||||||||| ||| ||||||    
T  2117612 agagagaataagaatataatgtgagtatgagagagaaagtt 2117652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 6458867 - 6458811
Alignment:
Q  215 gagaaagaaaaagaaa-gagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||| ||||||||||| |||| |||||||||||||| | ||||||||||| ||||||    
T  6458867 gagagagaaaaagaaaagagagaataagaatataatataagtatgaaagagaaagtt 6458811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 8725410 - 8725450
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| |||||||||||||||||||||||| ||| ||||||    
T  8725410 agagagaataagaatataatgtgagtatgagagagaaagtt 8725450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 17063948 - 17063908
Alignment:
Q  230 agagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    ||||| ||||| |||||||||||||||||| ||||||||||    
T  17063948 agagagaataaaaatataatgtgagtatgagagataaagtt 17063908  T

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Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 19522006 - 19522046
Alignment:
Q  245 ataatgtgagtatgaaagataaagttattacaaaagttgta 285  Q
    ||||||||||||||||||| |||||| | ||||||||||||    
T  19522006 ataatgtgagtatgaaagagaaagttgtcacaaaagttgta 19522046  T

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Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 270
Target Start/End: Complemental strand, 26627405 - 26627373
Alignment:
Q  238 taagaatataatgtgagtatgaaagataaagtt 270  Q
    |||||||||||||||||||||||||| ||||||    
T  26627405 taagaatataatgtgagtatgaaagagaaagtt 26627373  T

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Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 32425044 - 32424985
Alignment:
Q  222 aaaaagaaagagataa--taagaatataatgtgagtatgaaagataaagttattacaaaa 279  Q
    ||||||||||||| ||  |||||| ||||||||||||||||||| |||||| ||| ||||    
T  32425044 aaaaagaaagagaaaaaataagaagataatgtgagtatgaaagagaaagttgttaaaaaa 32424985  T

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Target: scaffold0072 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 14523 - 14570
Alignment:
Q  214 agagaaagaaaaagaaagagataataagaatataatgtgagtatgaaa 261  Q
    ||||||| || |||| ||||| ||||||||||||||||||||||||||    
T  14523 agagaaaaaagaagagagagagaataagaatataatgtgagtatgaaa 14570  T

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Target: scaffold0041 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 34506 - 34451
Alignment:
Q  215 gagaaagaaaaagaaagagataataagaatataatgtgagtatgaaagataaagtt 270  Q
    |||| |||||||| |||||| ||||||| |||||||||||||||| ||| ||||||    
T  34506 gagagagaaaaaggaagagaaaataagagtataatgtgagtatgagagagaaagtt 34451  T

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Target: scaffold0238 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 16494 - 16445
Alignment:
Q  212 atagagaaagaaaaag--aaagagataataagaatataatgtgagtatga 259  Q
    ||||||| ||||||||  ||||||| ||||||||||||||||||||||||    
T  16494 atagagagagaaaaaggaaaagagagaataagaatataatgtgagtatga 16445  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 337193 - 337148
Alignment:
Q  238 taagaatataatgtgagtatgaaagataaagttattacaaaagttgt 284  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||||||    
T  337193 taagaatataatgtgagtatgagagagaaagttatt-caaaagttgt 337148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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