View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17222_low_38 (Length: 263)
Name: NF17222_low_38
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_low_38 |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 60 - 248
Target Start/End: Original strand, 25900981 - 25901169
Alignment:
| Q |
60 |
ccaagagataattttacaactatagttggtcacatacacagacacaaataaaatgcttaaaaattaaaattgacttattttcatagtagcaattcatgaa |
159 |
Q |
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| T |
25900981 |
ccaagagataattttacaactatagttggtcacatacacagacacaaataaaatgcttaaaaattaaaattgacttattttcacagtagcaattcatgaa |
25901080 |
T |
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| Q |
160 |
tatgttgcaatcgtcaatgtgaacaagttcaatgtagataaatctcaagagaaaaagtatgaataagagaacatgaagacccatctatt |
248 |
Q |
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| T |
25901081 |
tatgttgcaatcgtcaatgtgaacaatttcaatgtagataaatctcaagagaaaaagtatgaataagagaacatgaagacccatctatt |
25901169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 60 - 235
Target Start/End: Complemental strand, 29199486 - 29199312
Alignment:
| Q |
60 |
ccaagagataattttacaactatagttggtcacatacacagacacaaataaaatgcttaaaaattaaaattgacttattttcatagtagcaattcatgaa |
159 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| |
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| T |
29199486 |
ccaagagatggttttacaactatagttggtcacacacacagaaacaaataaaatgcttaaaaattaaaattgacttattttcaca-tagcaattcaagaa |
29199388 |
T |
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| Q |
160 |
tatgttgcaatcgtcaatgtgaacaagttcaatgtagataaatctcaagagaaaaagtatgaataagagaacatga |
235 |
Q |
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| T |
29199387 |
tatgttgctacagtcgctgtgaacaatttcaatatagataaatctaaagagaaaaaatatgaataagagaacatga |
29199312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 4351436 - 4351267
Alignment:
| Q |
60 |
ccaagagataattttacaactatagttggtcacatacacagacacaaataaaatgcttaaaaattaaaattgacttattttcatagtagcaattcatgaa |
159 |
Q |
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||||||||| ||||||||||||| ||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4351436 |
ccaagagatggttttacaactatatttggtcacatacaaaaacaca--taaaatgcttaaaaattaaaattgacttattttcatagtagcaattcatgaa |
4351339 |
T |
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| Q |
160 |
tatgttgcaatcgtcaatgtgaacaagttcaatgtagataaatctcaagagaaaaagtatgaataagagaac |
231 |
Q |
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| T |
4351338 |
tgggtttctatagttggtgtgaacaatttcaataaagataaatctgaagagaaaaaatatgaataagagaac |
4351267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 15583 - 15751
Alignment:
| Q |
60 |
ccaagagataattttacaactatagttggtcacatacacagacacaaataaaatgcttaaaaattaaaattgacttattttcatagtagcaattcatgaa |
159 |
Q |
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||||||||| ||||||| ||||| ||||||||||||| | ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15583 |
ccaagagatggttttacatctatatttggtcacatacaaaaacaca--taaaatgcttaaaaattaaaattggcttattttcatagtagcaattcatgaa |
15680 |
T |
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| Q |
160 |
tatgttgcaatcgtcaatgtgaacaagttcaatgtagataaatctcaagagaaaaagtatgaataagagaac |
231 |
Q |
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| T |
15681 |
tgggtttctatagttggtgtgaacaatttcaataaagataaatctgaagagaaaaa-tatgaataagagaac |
15751 |
T |
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