View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17222_low_39 (Length: 260)
Name: NF17222_low_39
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 34059697 - 34059483
Alignment:
| Q |
11 |
cacagagtgtggttttgcctgaaaatgtgagattgatctgtggttgtgactttgttgtattttaatggcattttactccnnnnnnncttacaaagctgtt |
110 |
Q |
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| T |
34059697 |
cacaaagtgtggttttgcctgaaaatgtgagattgatctgtggttgtgactttgttgtattttaatggcattttactcctttttttcttacaaaactgtt |
34059598 |
T |
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| Q |
111 |
cttaaaattggtataagaattgcactcaaaaggttaacaccctttgagagaaattcactggagagtaagagaaaatcagtgtagaggcaatgactgattg |
210 |
Q |
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| T |
34059597 |
cttaaaattggtataacaattgcactcaaaaggttaacaccctttgagagaaattcactggagagtaagcgaaaatcagtgtagaggcaatgacagattg |
34059498 |
T |
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| Q |
211 |
agctagagcttcttg |
225 |
Q |
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||||||||||||||| |
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| T |
34059497 |
agctagagcttcttg |
34059483 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 223
Target Start/End: Complemental strand, 6505034 - 6504910
Alignment:
| Q |
99 |
tacaaagctgttcttaaaattggtataagaattgcactcaaaaggttaacaccctttgagagaaattcactggagagtaagagaaaatcagtgtagaggc |
198 |
Q |
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|||||| |||||||| ||| |||| | | |||||| | |||||| |||||||||||||||| ||||| | |||||||| || ||| || ||| |||||| |
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| T |
6505034 |
tacaaaactgttcttgaaaatggtctcataattgcggttaaaaggctaacaccctttgagagcaattcgccggagagtaggaaaaagtcggtgaagaggc |
6504935 |
T |
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| Q |
199 |
aatgactgattgagctagagcttct |
223 |
Q |
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| T |
6504934 |
aaatacaaatggagctagagcttct |
6504910 |
T |
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