View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17222_low_40 (Length: 256)
Name: NF17222_low_40
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 7284622 - 7284847
Alignment:
| Q |
18 |
tttacacattttccctgttaaaaatttgtaacacttaactaattttaaacatgtccatcttgattaattatttaaactcaacctaactaattaaaaaatt |
117 |
Q |
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| T |
7284622 |
tttacacattttccctcttaaaaatttgtaacacttaactaattttaaacatgtctatcttgattaattatttaaactcaacctaactaattaaaaaatt |
7284721 |
T |
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| Q |
118 |
gaaacacataataattgttgaaacacttaaatactttataatgtgaattagttagttaattacacatctaaaatgttttagtcatcttttttagctgctg |
217 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
7284722 |
gaaacacataataattgttgaaacacttaaatagtttataatgtgaattagttagttaattacacatctaaaatactttagtcatcttttttagctactg |
7284821 |
T |
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| Q |
218 |
aaactcaacaactagctgctttacct |
243 |
Q |
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|||||||||||| ||||||||||||| |
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| T |
7284822 |
aaactcaacaaccagctgctttacct |
7284847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 10397536 - 10397454
Alignment:
| Q |
107 |
attaaaaaattgaaacacataataattgttgaaacacttaaatactttataatgtgaattagttagttaattacacatctaaa |
189 |
Q |
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| T |
10397536 |
attaaaaacttgaaacatttaataattattgaaatatttaaatactttataatgcgaaatactcagctaaatacatatctaaa |
10397454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 189
Target Start/End: Complemental strand, 16336558 - 16336410
Alignment:
| Q |
45 |
gtaacacttaactaattttaaacatgtccatcttga-ttaattatttaaactcaacctaactaattaaaaaattgaaacaca---taataattgttgaaa |
140 |
Q |
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| T |
16336558 |
gtaacagttaactaattttaaacatgtccatatttaattaattattaaaaatcaaccaacgtaattaaaaaattgaaacactaattaataattattgaaa |
16336459 |
T |
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| Q |
141 |
cacttaaatactttataatgtgaattagttagttaattacacatctaaa |
189 |
Q |
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|||||||| ||||||||||| || | |||| |||||||||||||||| |
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| T |
16336458 |
cacttaaaaactttataatgcaaaaaatttagctaattacacatctaaa |
16336410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 15999047 - 15999144
Alignment:
| Q |
146 |
aaatactttataatgtgaattagttagttaattacacatctaaaatgttttagtcatcttttttagctgctgaaactcaacaactagctgctttacct |
243 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||| || | | || ||||| |||||||||||||||||||| ||||||||||||| |
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| T |
15999047 |
aaatgctttataatgtgaattatttagttaattacacatctaaaatacttaactaatatttttcagctgctgaaactcaacaaccagctgctttacct |
15999144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 243
Target Start/End: Complemental strand, 6839753 - 6839656
Alignment:
| Q |
146 |
aaatactttataatgtgaattagttagttaattacacatctaaaatgttttagtcatcttttttagctgctgaaactcaacaactagctgctttacct |
243 |
Q |
| |
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|||| |||| |||||||||||| ||||||||||||| ||||||||| || | | || ||||| |||||||||||||||||||| ||||||||||||| |
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| T |
6839753 |
aaatgctttgtaatgtgaattatttagttaattacatatctaaaatacttgactaatatttttcagctgctgaaactcaacaaccagctgctttacct |
6839656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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