View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17222_low_44 (Length: 250)

Name: NF17222_low_44
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17222_low_44
NF17222_low_44
[»] chr4 (41 HSPs)
chr4 (12-250)||(11298436-11298674)
chr4 (147-232)||(41228881-41228966)
chr4 (147-232)||(46704293-46704377)
chr4 (142-232)||(212971-213060)
chr4 (154-232)||(7206609-7206687)
chr4 (154-232)||(23297423-23297501)
chr4 (154-232)||(29877624-29877702)
chr4 (154-232)||(3564205-3564283)
chr4 (154-232)||(35124372-35124450)
chr4 (29-115)||(12034379-12034467)
chr4 (138-224)||(8057119-8057205)
chr4 (29-116)||(11840054-11840143)
chr4 (157-232)||(12495667-12495744)
chr4 (154-232)||(18424300-18424378)
chr4 (172-232)||(28074368-28074428)
chr4 (157-232)||(948060-948135)
chr4 (189-232)||(18630918-18630961)
chr4 (154-208)||(38345868-38345922)
chr4 (154-232)||(43699506-43699584)
chr4 (171-232)||(488407-488468)
chr4 (171-232)||(2548070-2548131)
chr4 (140-197)||(2702629-2702686)
chr4 (171-232)||(7148774-7148835)
chr4 (144-197)||(41229018-41229071)
chr4 (29-106)||(17381281-17381360)
chr4 (35-116)||(17381570-17381653)
chr4 (156-232)||(19725280-19725356)
chr4 (161-208)||(8130480-8130527)
chr4 (29-101)||(32934175-32934249)
chr4 (153-232)||(40699340-40699419)
chr4 (29-108)||(11839765-11839846)
chr4 (154-208)||(27368199-27368253)
chr4 (157-214)||(42611908-42611966)
chr4 (171-232)||(896972-897033)
chr4 (29-107)||(4161619-4161699)
chr4 (171-232)||(36740906-36740967)
chr4 (187-232)||(45018551-45018596)
chr4 (171-232)||(48591447-48591508)
chr4 (156-232)||(10794932-10795008)
chr4 (156-232)||(42617253-42617328)
chr4 (156-232)||(46176002-46176077)
[»] chr7 (31 HSPs)
chr7 (140-232)||(44613496-44613588)
chr7 (142-223)||(18265544-18265625)
chr7 (154-228)||(38372543-38372617)
chr7 (154-232)||(48021670-48021748)
chr7 (147-229)||(28759866-28759948)
chr7 (154-232)||(40629440-40629517)
chr7 (144-197)||(44613391-44613444)
chr7 (141-197)||(35809205-35809261)
chr7 (154-229)||(30181535-30181610)
chr7 (154-232)||(29390573-29390651)
chr7 (154-223)||(18837207-18837276)
chr7 (171-232)||(29378647-29378708)
chr7 (144-197)||(30094647-30094700)
chr7 (164-229)||(34922926-34922991)
chr7 (144-197)||(43818796-43818849)
chr7 (171-232)||(47511045-47511106)
chr7 (36-101)||(20889453-20889520)
chr7 (154-242)||(26331796-26331884)
chr7 (69-115)||(5429518-5429564)
chr7 (154-208)||(12473191-12473245)
chr7 (157-199)||(37779334-37779376)
chr7 (174-232)||(47648543-47648601)
chr7 (139-197)||(47654327-47654385)
chr7 (144-197)||(37465804-37465857)
chr7 (154-231)||(48895282-48895358)
chr7 (29-61)||(18942734-18942766)
chr7 (165-232)||(20888569-20888637)
chr7 (156-232)||(22032749-22032825)
chr7 (156-232)||(24371430-24371505)
chr7 (156-232)||(35809077-35809153)
chr7 (148-232)||(43391700-43391784)
[»] chr2 (28 HSPs)
chr2 (139-232)||(34913413-34913506)
chr2 (154-232)||(21788442-21788520)
chr2 (154-232)||(755765-755843)
chr2 (154-213)||(27703500-27703559)
chr2 (157-232)||(33321426-33321501)
chr2 (154-232)||(4026911-4026988)
chr2 (154-232)||(33321335-33321413)
chr2 (164-232)||(25836735-25836803)
chr2 (154-233)||(2790092-2790172)
chr2 (156-232)||(38471814-38471890)
chr2 (154-225)||(4090474-4090545)
chr2 (142-197)||(21788572-21788627)
chr2 (157-232)||(29774733-29774808)
chr2 (166-232)||(11776981-11777047)
chr2 (154-228)||(38216008-38216078)
chr2 (156-232)||(8441460-8441536)
chr2 (149-197)||(12950038-12950086)
chr2 (156-232)||(40301339-40301414)
chr2 (171-230)||(887414-887473)
chr2 (154-205)||(27709718-27709769)
chr2 (171-232)||(12238506-12238567)
chr2 (154-214)||(27243578-27243638)
chr2 (154-195)||(36125306-36125347)
chr2 (157-229)||(13056353-13056425)
chr2 (157-193)||(23956314-23956350)
chr2 (156-232)||(27881020-27881096)
chr2 (68-116)||(34883936-34883984)
chr2 (154-206)||(37409628-37409680)
[»] chr1 (46 HSPs)
chr1 (140-232)||(9572807-9572900)
chr1 (146-229)||(46689576-46689659)
chr1 (160-232)||(28122607-28122679)
chr1 (154-232)||(13038932-13039010)
chr1 (154-232)||(46473079-46473157)
chr1 (140-232)||(25485719-25485811)
chr1 (171-233)||(36423003-36423065)
chr1 (160-232)||(35897646-35897718)
chr1 (157-232)||(4068103-4068178)
chr1 (138-197)||(9572696-9572755)
chr1 (154-232)||(26946127-26946206)
chr1 (163-232)||(35282617-35282686)
chr1 (160-232)||(18327515-18327587)
chr1 (156-232)||(49971238-49971314)
chr1 (154-205)||(20169249-20169300)
chr1 (154-214)||(391153-391214)
chr1 (171-232)||(6337779-6337840)
chr1 (156-197)||(22593337-22593378)
chr1 (33-107)||(34177278-34177354)
chr1 (154-230)||(10850096-10850172)
chr1 (156-232)||(12256594-12256670)
chr1 (29-65)||(31134797-31134833)
chr1 (156-232)||(32497295-32497370)
chr1 (144-199)||(5347267-5347322)
chr1 (144-199)||(17628343-17628398)
chr1 (157-232)||(35590118-35590193)
chr1 (157-232)||(37148116-37148191)
chr1 (157-232)||(37156941-37157016)
chr1 (157-232)||(42591370-42591445)
chr1 (174-232)||(15515370-15515428)
chr1 (154-232)||(37712053-37712130)
chr1 (144-190)||(42363720-42363766)
chr1 (143-197)||(51162384-51162438)
chr1 (171-232)||(3069877-3069938)
chr1 (171-232)||(31378774-31378835)
chr1 (29-111)||(38444909-38444992)
chr1 (171-232)||(48819301-48819362)
chr1 (156-232)||(5243427-5243502)
chr1 (32-64)||(6541006-6541038)
chr1 (29-106)||(6728026-6728105)
chr1 (156-232)||(15791371-15791446)
chr1 (156-232)||(17628448-17628523)
chr1 (29-61)||(34177562-34177594)
chr1 (147-199)||(42591495-42591547)
chr1 (29-65)||(50804263-50804299)
chr1 (156-232)||(51162256-51162332)
[»] chr6 (37 HSPs)
chr6 (147-232)||(6758605-6758690)
chr6 (140-232)||(29623500-29623592)
chr6 (146-232)||(2040209-2040295)
chr6 (140-232)||(2255705-2255797)
chr6 (166-232)||(8014785-8014851)
chr6 (154-232)||(30533965-30534043)
chr6 (141-197)||(8010960-8011016)
chr6 (31-116)||(10219536-10219623)
chr6 (173-232)||(32675912-32675971)
chr6 (171-232)||(21025250-21025311)
chr6 (157-232)||(3211024-3211099)
chr6 (171-230)||(6776810-6776869)
chr6 (154-229)||(23239232-23239307)
chr6 (154-232)||(3829942-3830020)
chr6 (154-231)||(10873971-10874046)
chr6 (154-232)||(21891361-21891439)
chr6 (154-232)||(24625836-24625914)
chr6 (154-230)||(10687292-10687371)
chr6 (148-197)||(23239362-23239411)
chr6 (29-65)||(516065-516101)
chr6 (156-232)||(6632646-6632722)
chr6 (29-65)||(9307536-9307572)
chr6 (156-232)||(9894753-9894829)
chr6 (147-199)||(21609970-21610022)
chr6 (146-197)||(6752927-6752978)
chr6 (157-232)||(7267763-7267838)
chr6 (28-116)||(10067741-10067831)
chr6 (144-199)||(34223442-34223497)
chr6 (171-232)||(2034252-2034313)
chr6 (147-208)||(6752797-6752858)
chr6 (171-232)||(10054383-10054444)
chr6 (156-232)||(1468163-1468238)
chr6 (154-214)||(9201772-9201832)
chr6 (147-199)||(10184251-10184303)
chr6 (156-232)||(10184353-10184428)
chr6 (156-232)||(21610072-21610148)
chr6 (154-232)||(25430789-25430864)
[»] chr5 (43 HSPs)
chr5 (154-232)||(22201959-22202037)
chr5 (154-232)||(17128263-17128341)
chr5 (154-232)||(29922212-29922290)
chr5 (154-229)||(7364335-7364410)
chr5 (153-232)||(10537242-10537321)
chr5 (147-233)||(2502741-2502827)
chr5 (158-232)||(42852011-42852085)
chr5 (157-232)||(24030203-24030278)
chr5 (154-208)||(2878723-2878777)
chr5 (32-107)||(6217672-6217749)
chr5 (171-231)||(13625545-13625605)
chr5 (154-232)||(1473341-1473419)
chr5 (174-232)||(12467269-12467327)
chr5 (158-232)||(18602592-18602665)
chr5 (171-232)||(1943012-1943073)
chr5 (134-199)||(20458466-20458531)
chr5 (171-232)||(28625482-28625543)
chr5 (29-65)||(2707822-2707858)
chr5 (160-232)||(12987037-12987109)
chr5 (160-232)||(13060625-13060697)
chr5 (154-230)||(14243808-14243884)
chr5 (156-228)||(15413979-15414051)
chr5 (31-116)||(16127049-16127136)
chr5 (29-65)||(16902986-16903022)
chr5 (29-61)||(34034912-34034944)
chr5 (156-232)||(43318990-43319066)
chr5 (157-232)||(11163292-11163367)
chr5 (154-232)||(2670060-2670138)
chr5 (174-228)||(41534628-41534682)
chr5 (171-229)||(42706798-42706856)
chr5 (159-197)||(42852136-42852174)
chr5 (145-206)||(11706967-11707027)
chr5 (171-232)||(41059812-41059873)
chr5 (154-199)||(42558645-42558690)
chr5 (158-230)||(1576620-1576691)
chr5 (158-230)||(1608124-1608195)
chr5 (158-214)||(11991294-11991350)
chr5 (29-61)||(23159026-23159058)
chr5 (32-101)||(29686426-29686497)
chr5 (188-232)||(32508162-32508206)
chr5 (156-232)||(33757075-33757150)
chr5 (156-232)||(40415995-40416071)
chr5 (172-232)||(43268644-43268704)
[»] chr3 (38 HSPs)
chr3 (147-232)||(3876286-3876371)
chr3 (154-232)||(40581100-40581178)
chr3 (154-232)||(51409378-51409456)
chr3 (154-232)||(22809216-22809295)
chr3 (154-232)||(34707736-34707814)
chr3 (29-107)||(46848399-46848479)
chr3 (154-232)||(25341267-25341348)
chr3 (154-205)||(33946592-33946643)
chr3 (157-232)||(53218063-53218138)
chr3 (154-231)||(11528876-11528953)
chr3 (156-232)||(10448761-10448837)
chr3 (157-232)||(585008-585083)
chr3 (32-106)||(47199706-47199783)
chr3 (154-231)||(3845840-3845917)
chr3 (171-232)||(32900751-32900812)
chr3 (144-197)||(33946468-33946521)
chr3 (148-197)||(38524203-38524252)
chr3 (171-232)||(43079957-43080018)
chr3 (171-232)||(52421164-52421225)
chr3 (150-197)||(4974426-4974473)
chr3 (32-116)||(14984407-14984492)
chr3 (29-64)||(43837080-43837115)
chr3 (157-215)||(10272110-10272168)
chr3 (154-232)||(21296751-21296829)
chr3 (30-93)||(24255218-24255283)
chr3 (154-232)||(29270346-29270424)
chr3 (161-207)||(32901196-32901242)
chr3 (79-116)||(621879-621916)
chr3 (144-181)||(32901066-32901103)
chr3 (148-197)||(43376810-43376859)
chr3 (171-232)||(52021248-52021309)
chr3 (156-232)||(2086714-2086790)
chr3 (156-232)||(4257325-4257400)
chr3 (156-232)||(4974298-4974374)
chr3 (68-116)||(20936264-20936312)
chr3 (154-206)||(23555469-23555521)
chr3 (156-232)||(29830793-29830869)
chr3 (154-198)||(53261695-53261739)
[»] scaffold0299 (1 HSPs)
scaffold0299 (147-230)||(11325-11408)
[»] chr8 (30 HSPs)
chr8 (154-233)||(32131425-32131504)
chr8 (154-232)||(26046979-26047057)
chr8 (154-232)||(32924235-32924313)
chr8 (171-232)||(28879060-28879121)
chr8 (171-232)||(32975689-32975750)
chr8 (171-232)||(38895661-38895722)
chr8 (158-228)||(19925546-19925616)
chr8 (140-197)||(30974104-30974161)
chr8 (171-232)||(35453412-35453473)
chr8 (141-197)||(2669763-2669819)
chr8 (156-232)||(42102094-42102169)
chr8 (157-208)||(13131418-13131469)
chr8 (154-197)||(16706028-16706071)
chr8 (29-117)||(17488212-17488302)
chr8 (157-208)||(19327855-19327906)
chr8 (166-229)||(29243090-29243152)
chr8 (149-232)||(45548168-45548251)
chr8 (154-208)||(16706147-16706201)
chr8 (174-232)||(24350542-24350600)
chr8 (171-232)||(41145418-41145482)
chr8 (171-228)||(2289913-2289970)
chr8 (42-116)||(23357405-23357481)
chr8 (171-232)||(32213045-32213106)
chr8 (171-232)||(34286586-34286647)
chr8 (187-232)||(35168464-35168509)
chr8 (149-197)||(2563473-2563521)
chr8 (156-232)||(12607067-12607142)
chr8 (156-232)||(14942411-14942487)
chr8 (156-232)||(38338874-38338949)
chr8 (156-232)||(42363340-42363415)
[»] scaffold1367 (1 HSPs)
scaffold1367 (147-230)||(1036-1119)
[»] scaffold0157 (1 HSPs)
scaffold0157 (157-232)||(24733-24810)
[»] scaffold0012 (1 HSPs)
scaffold0012 (154-232)||(178485-178563)
[»] scaffold0057 (2 HSPs)
scaffold0057 (154-229)||(43842-43917)
scaffold0057 (154-226)||(24418-24489)
[»] scaffold1088 (1 HSPs)
scaffold1088 (156-232)||(1281-1357)
[»] scaffold0512 (1 HSPs)
scaffold0512 (145-181)||(4195-4231)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 11298436 - 11298674
Alignment:
Q  12 gaatatgaaaaatgaacgggtaatagtcattttagtccctgaatgtgtaacgaggccacaataattcctcaatgtatcaaaatttcaaaagagtccctaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11298436 gaatatgaaaaatgaacgggtaatagtcattttagtccctgaatgtgtaacgaggccacagtaattcctcaatgtatcaaaatttcaaaagagtccctaa 11298535  T
Q  112 ttgtgacaataagattgatatgacaataagggcccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgag 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11298536 ttgtgacaataagattgatatgacaataagggcccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgag 11298635  T
Q  212 cttcttaaggtagtttatgaatgaagataaagttttcgt 250  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11298636 cttcttaaggtagtttatgaatgaagataaagttttcgt 11298674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 41228881 - 41228966
Alignment:
Q  147 gtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||| ||||| |||||||||||||||||    
T  41228881 gtttggattgagcttatgcaaaacagcttatgcaggtaaataggcttttatttattattcataagcttgttaaggtagtttatgaa 41228966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 46704377 - 46704293
Alignment:
Q  147 gtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||||| |||||| ||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  46704377 gtttggattgagcttatgtaaaacaacttatgcaaataat-aagcttttatttattattcatgagcttgttaaggtagtttatgaa 46704293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 213060 - 212971
Alignment:
Q  142 ggcccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||| ||||||||||||||||||||||||| ||||||||| ||| |||| ||||||||||||||||| ||||| |||||||||||||||||    
T  213060 ggcctgtttggattgagcttatgcaaaacaacttatgcaaataaataag-ttttatttattattcataagcttgttaaggtagtttatgaa 212971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 7206687 - 7206609
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||||| |||||||||||||| | | ||||||||||||||||||||| |||| | |||||||||||||||||    
T  7206687 ttgagcttatgcagaacagcttatgcaaatgaataagcttttatttattattcacgagcctgttaaggtagtttatgaa 7206609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 23297423 - 23297501
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||| ||||||||||| ||| ||||||||||| |||||||||| || || | |||||||||||||||    
T  23297423 ttgagcttatgcaaaatagcttatgcaaataaataagcttttatgtattattcataagtttgtcaaggtagtttatgaa 23297501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 29877624 - 29877702
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||||||||||  |||||||| ||| ||||||||||| |||||||||| |||||  ||||||||||||||||    
T  29877624 ttgagcttatgcaaaacaatttatgcaaataaataagcttttatgtattattcataagcttgctaaggtagtttatgaa 29877702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 3564205 - 3564283
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||||||||||||||||| || ||| ||| ||||||| |||||||||| || || | |||||||||||||||    
T  3564205 ttgagcttatgcaaaacagcttatgaaaataaataaacttttatatattattcataagtttgtcaaggtagtttatgaa 3564283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 35124372 - 35124450
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||||||||||||||| ||  ||| ||||||| || ||||||| ||||| | |||||||||||||||    
T  35124372 ttgagcttatgcaaaacagcttatgcaaatatataaccttttatgtactattcataagcttgtcaaggtagtttatgaa 35124450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 12034379 - 12034467
Alignment:
Q  29 gggtaatagtcattttagtccctgaatgtgtaacgag--gccacaataattcctcaatgtatcaaaatttcaaaagagtccctaattgt 115  Q
    |||||||||||||||| |||||||||||| |||||||  | ||||||| | |||||||||||||||||| ||||| |||| || |||||    
T  12034379 gggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctgattgt 12034467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 8057205 - 8057119
Alignment:
Q  138 taagggcccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtag 224  Q
    ||||| ||||||||||||||||||||| |||| | || ||||||  || |||| ||||||||||||||||| ||||| | |||||||    
T  8057205 taaggtcccgtttggattgagcttatgaaaaataactaatgcaaaaaaataagtttttatttattattcataagcttgtcaaggtag 8057119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 11840143 - 11840054
Alignment:
Q  29 gggtaatagtcattttagtccctgaatgtgtaacgag--gccacaataattcctcaatgtatcaaaatttcaaaagagtccctaattgtg 116  Q
    |||||||||||||||| ||||||||||| |||| |||  | | |||||   |||||||||||||||||||||||| ||||||| ||||||    
T  11840143 gggtaatagtcattttggtccctgaatgcgtaaggagtagtcgcaataggccctcaatgtatcaaaatttcaaaatagtccctgattgtg 11840054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 12495744 - 12495667
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagct--tcttaaggtagtttatgaa 232  Q
    |||||| |||||||||||||||||| ||| ||||||||||| |||||||||| ||||  ||  |||||||||||||||    
T  12495744 agcttaagcaaaacagcttatgcaaataaataagcttttatgtattattcataagcttgtcaaaaggtagtttatgaa 12495667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 18424378 - 18424300
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||||||||||  |||| ||| ||| ||||||||||| |||||||||| | ||| | |||||||||||||||    
T  18424378 ttgagcttatgcaaaacaatttatacaaataaataagcttttatgtattattcataaacttgtgaaggtagtttatgaa 18424300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 28074368 - 28074428
Alignment:
Q  172 gcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||| ||| ||||||||||| |||||||||| ||||| | |||||||||||||||    
T  28074368 gcttatgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaa 28074428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 948060 - 948135
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||||| |||||||| || ||| ||||||||||| |||||||||| |  || | |||||||||||||||    
T  948060 agcttatgcaaaatagcttatgaaaataaataagcttttatgtattattcataactttgtcaaggtagtttatgaa 948135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 18630961 - 18630918
Alignment:
Q  189 agcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||| ||||||||| |||||||||||||||||    
T  18630961 agcttttatttattatccatgagcttgttaaggtagtttatgaa 18630918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 38345922 - 38345868
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcat 208  Q
    |||||||||||||||||||||||| ||| ||| ||||||||||| || |||||||    
T  38345922 ttgagcttatgcaaaacagcttatccaaataaataagcttttatgtagtattcat 38345868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 43699584 - 43699506
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| |||||| ||||| ||| ||| ||||||||||| | |||||||| ||||| | || ||||||||||||    
T  43699584 ttgagcttatgaaaaacaacttatacaaataaataagcttttatgtcttattcataagcttgtcaatgtagtttatgaa 43699506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 488468 - 488407
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||| ||||||||||| ||||||| || ||||| | |||||||||||||||    
T  488468 agcttatgcaaataagtaagcttttatgtattattaataagcttgtcaaggtagtttatgaa 488407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 2548131 - 2548070
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||| |||| |||||||| |||||||||||| | ||||| |||||||||||    
T  2548131 agcttatgcaaataaataagtttttatttgttattcatgagcctattaagttagtttatgaa 2548070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 2702629 - 2702686
Alignment:
Q  140 agggcccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    |||||| |||||||||||||||| | |||| ||| ||||||| |||||||||||||||    
T  2702629 agggcctgtttggattgagcttacgaaaaagagcatatgcaaataattaagcttttat 2702686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 7148774 - 7148835
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||| ||||||||||| |||||||||| ||||| | |||||||||| ||||    
T  7148774 agcttatgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttttgaa 7148835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 41229071 - 41229018
Alignment:
Q  144 cccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    ||||||||||||||||||||| |||| ||||||||||| ||| | |||||||||    
T  41229071 cccgtttggattgagcttatgaaaaatagcttatgcaaataaattagcttttat 41229018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 17381281 - 17381360
Alignment:
Q  29 gggtaatagtcattttagtccctgaatgtgtaacgag--gccacaataattcctcaatgtatcaaaatttcaaaagagtc 106  Q
    |||||||||||||||| || |||||||||||| | ||  | ||||||| | | |||||||||||||||||||||| ||||    
T  17381281 gggtaatagtcattttggttcctgaatgtgtagcaagtagtcacaatagtccttcaatgtatcaaaatttcaaaaaagtc 17381360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 17381653 - 17381570
Alignment:
Q  35 tagtcattttagtccctgaatgtgtaacgag--gccacaataattcctcaatgtatcaaaatttcaaaagagtccctaattgtg 116  Q
    |||||| ||| ||||||||||| ||||| ||  | ||||||| | |||||||||||||||||| ||||| ||||||| ||||||    
T  17381653 tagtcactttggtccctgaatgagtaacaagtagtcacaatagtccctcaatgtatcaaaattccaaaatagtccctgattgtg 17381570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 19725280 - 19725356
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||| ||||||||||||||||| ||| || | |||||| ||||||| || || || |||||||| ||||||||    
T  19725280 gagcttatacaaaacagcttatgcaattaaatacgtttttatgtattatttataagtttgttaaggtattttatgaa 19725356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 8130480 - 8130527
Alignment:
Q  161 tatgcaaaacagcttatgcaagtaattaagcttttatttattattcat 208  Q
    ||||||||||||||||||||| ||| |||||||||||  |||||||||    
T  8130480 tatgcaaaacagcttatgcaaataaataagcttttatgcattattcat 8130527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 32934249 - 32934175
Alignment:
Q  29 gggtaatagtcattttagtccctgaatgtgtaacga--ggccacaataattcctcaatgtatcaaaatttcaaaa 101  Q
    |||||||| ||||||| |||||||||||||||| ||  | ||| |||| | ||||||||||||||||||| ||||    
T  32934249 gggtaataatcattttggtccctgaatgtgtaaggagtgaccataatagtccctcaatgtatcaaaattttaaaa 32934175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 40699340 - 40699419
Alignment:
Q  153 attgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||||||||||||||||||||| ||| |||  |||||| || |   ||| ||||| | |||||||||||||||    
T  40699340 attgagcttatgcaaaacagcttatgcaaataaataaatttttatgtagtgcgcataagcttgtcaaggtagtttatgaa 40699419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 11839765 - 11839846
Alignment:
Q  29 gggtaatagtcattttagtccctgaatgtgtaacgag--gccacaataattcctcaatgtatcaaaatttcaaaagagtccc 108  Q
    ||||||||| |||||| |||  ||||| |||||||||  ||||||||| | ||||||| |||| ||||||||||| ||||||    
T  11839765 gggtaatagccattttggtctatgaatttgtaacgagtagccacaatagtccctcaatatatcgaaatttcaaaatagtccc 11839846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 27368253 - 27368199
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcat 208  Q
    |||| |||||| |||||| ||||||||| ||| ||||||||||| ||||||||||    
T  27368253 ttgaacttatgtaaaacaacttatgcaaataaataagcttttatatattattcat 27368199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 42611966 - 42611908
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagcttt-tatttattattcatgagctt 214  Q
    ||||||||||||||| ||||||||| ||| |||||||| ||| |||||||||| |||||    
T  42611966 agcttatgcaaaacaacttatgcaaataaataagctttatatgtattattcataagctt 42611908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 896972 - 897033
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||| ||| ||||||| |||||||||| ||||| | || ||||||||||||    
T  896972 agcttatgcaaataaataaacttttatgtattattcataagcttgtcaatgtagtttatgaa 897033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 4161619 - 4161699
Alignment:
Q  29 gggtaatagtcattttagtccctgaatgtgtaacgag--gccacaataattcctcaatgtatcaaaatttcaaaagagtcc 107  Q
    |||||||||||| ||| |||||  ||||||||| |||  | ||||||| | | |||||||||||||||||||||| |||||    
T  4161619 gggtaatagtcactttcgtccccaaatgtgtaatgagtagtcacaatagtccttcaatgtatcaaaatttcaaaatagtcc 4161699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 36740906 - 36740967
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||| ||||||||||| |||||| ||| ||||| | || ||||||||||||    
T  36740906 agcttatgcaaataaataagcttttatatattatgcataagcttgtcaaagtagtttatgaa 36740967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 45018551 - 45018596
Alignment:
Q  187 taagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||| |||||||||||||||||||| || |||| ||||||||||||    
T  45018551 taagattttatttattattcatgagattgttaaagtagtttatgaa 45018596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 48591508 - 48591447
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||| |||| |||||| ||||||||||  |||| | |||||||||||||||    
T  48591508 agcttatgcaaataaataagtttttatatattattcatacgcttgtcaaggtagtttatgaa 48591447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 10795008 - 10794932
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||||||| || || ||| |||| |||||| ||||||| |  ||||  ||||||| |||||||||    
T  10795008 gagcttatgcaaaacagcttgtgtaaataaataagtttttatgtattatttaaaagctcgttaaggtggtttatgaa 10794932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 42617328 - 42617253
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||| ||||||||||||||||| ||| || | |||||  ||||||| || || || |||||||||||||||||    
T  42617328 gagcttatacaaaacagcttatgcaaataaatacgtttttaagtattatttataag-tttttaaggtagtttatgaa 42617253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 46176077 - 46176002
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||  |||||||||||||||| ||| |||| |||||| ||||||| || |  || |||||||||||||||||    
T  46176077 gagcttatataaaacagcttatgcaaataaataagtttttatgtattatttat-aaatttttaaggtagtttatgaa 46176002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 44613588 - 44613496
Alignment:
Q  140 agggcccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||||||||||||    
T  44613588 agggtccgtttggattgagcttatgcaaaacagcttatgcaaataaataagcttttatttattattcataagcttgttaaggtagtttatgaa 44613496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 18265625 - 18265544
Alignment:
Q  142 ggcccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggta 223  Q
    ||||||||||||||||||||||| | || ||||||||||| |||  ||||||||||||||||||||||||||| ||||||||    
T  18265625 ggcccgtttggattgagcttatgtagaagagcttatgcaaataaagaagcttttatttattattcatgagcttgttaaggta 18265544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 38372543 - 38372617
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagttta 228  Q
    |||||||||||||||||||||||||||| ||| |||||| |||| |||||||||| || || | |||||||||||    
T  38372543 ttgagcttatgcaaaacagcttatgcaaataaataagctcttatgtattattcataagtttgtcaaggtagttta 38372617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 48021748 - 48021670
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||| |||||||  |||||||| ||| |||||| ||||||||||||||| ||||| |||| ||||||||||||    
T  48021748 ttgagcttatacaaaacaatttatgcaaataaataagctcttatttattattcataagcttgttaaagtagtttatgaa 48021670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 28759948 - 28759866
Alignment:
Q  147 gtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttat 229  Q
    |||||||||||| ||||| |||||| |||||| ||  ||  ||| ||||||||||||||||| ||||| ||||||||||||||    
T  28759948 gtttggattgagtttatgtaaaacaacttatgaaaaaaaaaaagtttttatttattattcataagcttgttaaggtagtttat 28759866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 40629517 - 40629440
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||||||||||| ||| ||| ||| | ||||| |||||||||| ||||| | |||||||||||||||    
T  40629517 ttgagcttatgcaaaacagcttatccaaataaataaac-tttatgtattattcataagcttgtcaaggtagtttatgaa 40629440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 44613391 - 44613444
Alignment:
Q  144 cccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    ||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||    
T  44613391 cccgtttggattgagcttatgaaaaatagcttatgcaaataaataagcttttat 44613444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 35809261 - 35809205
Alignment:
Q  141 gggcccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    ||||| |||||||||||||||||| |||| |||||||| || |||||||||||||||    
T  35809261 gggcctgtttggattgagcttatgaaaaagagcttatgtaaataattaagcttttat 35809205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 30181535 - 30181610
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttat 229  Q
    |||||||||||||| ||| |||| |||| |||  |||||||||| |||||||||| ||||| | ||||||||||||    
T  30181535 ttgagcttatgcaatacaacttaggcaaataaagaagcttttatgtattattcataagcttgtcaaggtagtttat 30181610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 29390651 - 29390573
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||| ||||| |||||| ||||||||| ||| ||| |||| || |||||||||| ||||| | |||||||||||||||    
T  29390651 ttgagtttatggaaaacaacttatgcaaataaataatctttgatgtattattcataagcttgtaaaggtagtttatgaa 29390573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 18837207 - 18837276
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggta 223  Q
    |||||||||||||||||||| ||||||| ||| ||||||| | | |||||||||| ||||| | ||||||    
T  18837207 ttgagcttatgcaaaacagcatatgcaaataaataagcttatgtgtattattcataagcttgtaaaggta 18837276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 29378647 - 29378708
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||| ||||||||||| ||||||| ||||| || | |||||||||||||||    
T  29378647 agcttatgcaaataaataagcttttatgtattatttatgagtttgtcaaggtagtttatgaa 29378708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 30094647 - 30094700
Alignment:
Q  144 cccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    ||||||||||||||||| ||| |||| ||||||||||| ||| |||||||||||    
T  30094647 cccgtttggattgagctaatgaaaaagagcttatgcaaataaataagcttttat 30094700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 34922926 - 34922991
Alignment:
Q  164 gcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttat 229  Q
    |||||||| ||||||||| ||| ||||||||||| |||||||||| || || | ||||||||||||    
T  34922926 gcaaaacaacttatgcaaataaataagcttttatgtattattcataagtttgtcaaggtagtttat 34922991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 43818796 - 43818849
Alignment:
Q  144 cccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    ||||||||||||||||||||| |||| ||||||||||| ||| |||| ||||||    
T  43818796 cccgtttggattgagcttatgaaaaagagcttatgcaaataaataagtttttat 43818849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 47511045 - 47511106
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||| ||||||||||| |||||||||| ||||| |||||| ||| ||||||    
T  47511045 agcttatgcaaataaataagcttttatgtattattcataagcttgttaaggaagtctatgaa 47511106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 20889520 - 20889453
Alignment:
Q  36 agtcattttagtccctgaatgtgtaacgag--gccacaataattcctcaatgtatcaaaatttcaaaa 101  Q
    ||||||| | ||||||||||||||||| ||  ||||||||| | |||||||||||||| |||||||||    
T  20889520 agtcattgttgtccctgaatgtgtaacaagtagccacaatagtccctcaatgtatcaacatttcaaaa 20889453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 26331796 - 26331884
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaatgaagataaa 242  Q
    |||||||||||||||| |||||||| || ||| ||||||||| |  |||  || | ||||| |||||||||||||||||| || |||||    
T  26331796 ttgagcttatgcaaaatagcttatgtaaataaataagcttttctgcattgatcgtaagcttgttaaggtagtttatgaattaacataaa 26331884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 5429564 - 5429518
Alignment:
Q  69 acaataattcctcaatgtatcaaaatttcaaaagagtccctaattgt 115  Q
    |||||||||||||||||||||||||||| |||| ||| ||| |||||    
T  5429564 acaataattcctcaatgtatcaaaattttaaaatagttcctgattgt 5429518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 12473191 - 12473245
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcat 208  Q
    |||||||||||||||||| |||||||||  || |||| |||||| ||||||||||    
T  12473191 ttgagcttatgcaaaacaacttatgcaaacaaataagtttttatgtattattcat 12473245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 37779376 - 37779334
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagcttttattt 199  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||    
T  37779376 agcttatacaaaacagcttatgcaaataaataagcttttattt 37779334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 47648543 - 47648601
Alignment:
Q  174 ttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||| ||| ||| ||||||||||||||||| || ||| ||||| |||||||||||    
T  47648543 ttatgcaaataaataaacttttatttattattcacgaacttgttaagatagtttatgaa 47648601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 47654327 - 47654385
Alignment:
Q  139 aagggcccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    |||| ||||||||||||||||||||| |||| | ||||||||| ||| |||| ||||||    
T  47654327 aaggccccgtttggattgagcttatgaaaaagatcttatgcaaataaataagtttttat 47654385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 37465804 - 37465857
Alignment:
Q  144 cccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    ||||||||||| ||||||||| |||  ||||||||||| ||| |||||||||||    
T  37465804 cccgtttggatcgagcttatgaaaattagcttatgcaaataaataagcttttat 37465857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 48895282 - 48895358
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatga 231  Q
    ||||||||||||||||| | || ||||| ||| ||||| || || |||||||||| ||||| | ||||||||||||||    
T  48895282 ttgagcttatgcaaaaccgttt-tgcaaataaataagcattcatatattattcataagcttatcaaggtagtttatga 48895358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 18942734 - 18942766
Alignment:
Q  29 gggtaatagtcattttagtccctgaatgtgtaa 61  Q
    |||||||||||||||| ||||||||||||||||    
T  18942734 gggtaatagtcattttggtccctgaatgtgtaa 18942766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 20888569 - 20888637
Alignment:
Q  165 caaaacagcttatgcaagtaattaagctttt-atttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||| |||||||| ||| ||||||||| || |||||||||| |||||   |||||||||||||||    
T  20888569 caaaacagtttatgcaaataaataagctttttatgtattattcataagcttgcaaaggtagtttatgaa 20888637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 22032749 - 22032825
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||| |||||| ||||||||| ||| || | |||||| ||||||| || ||| | |||| ||||||||||||    
T  22032749 gagcttatgtaaaacaacttatgcaaataaatatgtttttatgtattatttataagcatgttaatgtagtttatgaa 22032825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 24371505 - 24371430
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||  |||||||||||||||| ||| |||| ||| || ||||||| || || || |||||||||||||||||    
T  24371505 gagcttatataaaacagcttatgcaaataaataagttttaatgtattatttataag-tttttaaggtagtttatgaa 24371430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 35809077 - 35809153
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||| |||| || ||||||||| ||| ||||| || || ||||||| || ||||| |||| ||||||||||||    
T  35809077 gagcttatacaaagcatcttatgcaaataaataagcattaatgtattatttataagcttgttaacgtagtttatgaa 35809153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 43391700 - 43391784
Alignment:
Q  148 tttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||| ||||||  ||| ||||||| |||||| || ||| ||| ||| | |||||||||||| || || |||||||||||||||||    
T  43391700 tttgaattgagtctatacaaaacaacttatgtaaataaataaacttatgtttattattcataagtttgttaaggtagtttatgaa 43391784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 34913506 - 34913413
Alignment:
Q  139 aagggcccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| || || ||||| |||||||||||    
T  34913506 aagggtccgtttggattgagcttatgcaaaacagcttatgcaaataaataagcttttatgtattattcataagtttgttaagatagtttatgaa 34913413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 21788442 - 21788520
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||| |||||||||||| ||||||||| ||| |||||||||||||||||||||| ||||| ||||| |||||||||||    
T  21788442 ttgagtttatgcaaaacatcttatgcaaataaataagcttttatttattattcataagcttgttaagatagtttatgaa 21788520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 755843 - 755765
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||||| |||| |||| ||||||||||||||| |||||||||  ||||| ||| |||||||||||||    
T  755843 ttgagcttatgcaaaacaacttacgcaaataattaagcttttatgtattattcagaagcttgttacggtagtttatgaa 755765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 27703559 - 27703500
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagct 213  Q
    |||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| ||||    
T  27703559 ttgagcttatgcaaaacagcttatgcaaataaataagcttttatatattattcataagct 27703500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 33321501 - 33321426
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||||||| ||||||||| |||||||| |||||| ||||| |||| ||||| | |||||||||||||||    
T  33321501 agcttatgcaaaacaacttatgcaaataattaagtttttatgtattactcataagcttgtcaaggtagtttatgaa 33321426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 4026911 - 4026988
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||||||||| |||||||||| ||| ||||||||||| ||||| |||| ||||| | |||||||||||||||    
T  4026911 ttgagcttatgcaaaactgcttatgcaaataaataagcttttatgtatta-tcataagcttgtcaaggtagtttatgaa 4026988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 33321413 - 33321335
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||||| ||| ||||| ||| ||||||||||| | |||||||| ||||| | |||||||||||||||    
T  33321413 ttgagcttatgcaaaacaacttgtgcaaataaataagcttttatgtcttattcataagcttgtcaaggtagtttatgaa 33321335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 25836803 - 25836735
Alignment:
Q  164 gcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||||| ||| || |||||||| |||||||||| ||||| | |||||||||||||||    
T  25836803 gcaaaacagcttatgcaaataaatatgcttttatgtattattcataagcttgtcaaggtagtttatgaa 25836735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 2790172 - 2790092
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagt-aattaagcttttatttattattcatgagcttcttaaggtagtttatgaat 233  Q
    |||||||||||||||||||||||||||| | ||| ||||||||||  |||||| || ||||| | |||||| |||||||||    
T  2790172 ttgagcttatgcaaaacagcttatgcaaataaataaagcttttatgcattattgataagcttgtcaaggtattttatgaat 2790092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 38471890 - 38471814
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||||||||||||| ||| || |||||||| | ||||  || |||||||| | ||||||||||||    
T  38471890 gagcttatgcaaaacagcttatgcaaataaatatgcttttatgtgttatgtataagcttcttgatgtagtttatgaa 38471814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 4090474 - 4090545
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagt 225  Q
    |||||||||||||||||||||||||||| ||| ||| |||| || |||||||||| | ||| | ||||||||    
T  4090474 ttgagcttatgcaaaacagcttatgcaaataaataaactttgatgtattattcataatcttgtcaaggtagt 4090545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 21788627 - 21788572
Alignment:
Q  142 ggcccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    ||||||||||||||||||||||| |||| | ||||||||| ||| |||||||||||    
T  21788627 ggcccgtttggattgagcttatgaaaaataacttatgcaaataaataagcttttat 21788572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 29774733 - 29774808
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||| |||| ||||||||| ||| ||| |||||||  ||||||||| || || |||||||||||||||||    
T  29774733 agcttatgcataacaacttatgcaaataaataaacttttatgcattattcattagtttgttaaggtagtttatgaa 29774808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 11776981 - 11777047
Alignment:
Q  166 aaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||  ||| ||||||||||| ||||||| || ||||| ||||| |||||||||||    
T  11776981 aaaacagcttatgcatataaataagcttttatgtattatttataagcttgttaagttagtttatgaa 11777047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 38216008 - 38216078
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagttta 228  Q
    |||||||||||||||||||||||||||| ||| |||    |||| |||||||||| ||||| | |||||||||||    
T  38216008 ttgagcttatgcaaaacagcttatgcaaataaataa----ttatgtattattcataagcttgtcaaggtagttta 38216078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 8441460 - 8441536
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||||| |||||||||||| ||| || | |||||| ||||||| || || || |||| ||||||||||||    
T  8441460 gagcttatgcaaagcagcttatgcaaataaatatgtttttatgtattatttataagtttgttaatgtagtttatgaa 8441536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 12950038 - 12950086
Alignment:
Q  149 ttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    |||||||||||||||| |||| ||| ||||||| |||||||||||||||    
T  12950038 ttggattgagcttatgaaaaagagcatatgcaaataattaagcttttat 12950086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 40301339 - 40301414
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||  |||||||||||||||| ||| |||| |||||| ||||||| || || || |||||||||||||||||    
T  40301339 gagcttataaaaaacagcttatgcaaataaataagtttttatgtattatttataag-tttttaaggtagtttatgaa 40301414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 887414 - 887473
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatg 230  Q
    ||||||||||| ||| ||||||||| | |||||||||| ||||| | |||||||||||||    
T  887414 agcttatgcaaataaataagcttttttgtattattcataagcttgtcaaggtagtttatg 887473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 27709769 - 27709718
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattatt 205  Q
    ||||| |||||||| ||||||||||||| ||| ||||||||||| |||||||    
T  27709769 ttgagattatgcaagacagcttatgcaaataaataagcttttatatattatt 27709718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 12238567 - 12238506
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||| ||||| || || ||||||| || ||||| |||||||||||||||||    
T  12238567 agcttatgcaaataaataagcattaatgtattatttataagcttgttaaggtagtttatgaa 12238506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 27243638 - 27243578
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgca-agtaattaagcttttatttattattcatgagctt 214  Q
    |||| |||||||||||||||||||||| ||||| ||||||||||  |||||||||| |||||    
T  27243638 ttgaacttatgcaaaacagcttatgcatagtaa-taagcttttacgtattattcataagctt 27243578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 36125347 - 36125306
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagctttt 195  Q
    ||||||||||| |||||||||||||||  |||||||||||||    
T  36125347 ttgagcttatgaaaaacagcttatgcatataattaagctttt 36125306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 13056425 - 13056353
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttat 229  Q
    |||| ||||||||| | |||||||| ||  ||||||||||| |||| ||||| ||||| | ||||||||||||    
T  13056425 agctcatgcaaaacggattatgcaaatagataagcttttatgtatttttcataagcttgtcaaggtagtttat 13056353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 23956350 - 23956314
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagctt 193  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  23956350 agcttatgcaaaacagcttatgcaaataaataagctt 23956314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 27881096 - 27881020
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||| ||||||||||| ||| || | | |||| ||||||| || || || ||||||||| |||||||    
T  27881096 gagcttatgcaaaatagcttatgcaaataaatatgttattatgtattatttataagtttattaaggtagcttatgaa 27881020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 34883936 - 34883984
Alignment:
Q  68 cacaataattcctcaatgtatcaaaatttcaaaagagtccctaattgtg 116  Q
    ||||||| | ||||||||||||||||||| |||| |||| |||||||||    
T  34883936 cacaatagtccctcaatgtatcaaaattttaaaatagtctctaattgtg 34883984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 37409628 - 37409680
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattc 206  Q
    |||||| ||||||||||| ||||||||| ||| ||||||||||  ||||||||    
T  37409628 ttgagcgtatgcaaaacaacttatgcaaataaataagcttttaagtattattc 37409680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 9572900 - 9572807
Alignment:
Q  140 agggcccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagc-ttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||| ||||| ||||||||||||||||| || || |||||||||||||||||    
T  9572900 agggcccgtttggattgagcttatgcaaaacagcttttgcaaataaataagctttttatttattattcataagtttgttaaggtagtttatgaa 9572807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 146 - 229
Target Start/End: Complemental strand, 46689659 - 46689576
Alignment:
Q  146 cgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttat 229  Q
    ||||||||||||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||| |||||||| |||||    
T  46689659 cgtttggattgagcttatgcaaaacagtttatgcaaataaaaaagcttttatttattattcatgagcttgttaaggtattttat 46689576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 28122607 - 28122679
Alignment:
Q  160 ttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||| |||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  28122607 ttatgcaaatcagcttatgcaaataaattagcttttatttattattcatgagcttcttaaggtagtttatgaa 28122679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 13038932 - 13039010
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||| ||||||||||| ||| |||||| ||| ||||||||||| |||||||||||||||| |||||||||||||||||    
T  13038932 ttgaggttatgcaaaacggctgatgcaaataaataagcttttatatattattcatgagcttgttaaggtagtttatgaa 13039010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 46473079 - 46473157
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||||||||| || || ||| ||||||||||||||||||||||||| || |||||||||| ||||||    
T  46473079 ttgagcttatgcaaaacagcttgtgtaaataaataagcttttatttattattcatgaggtttttaaggtagtatatgaa 46473157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 25485719 - 25485811
Alignment:
Q  140 agggcccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||| |||||||||| ||||| ||||| ||||||||||| ||| |||  |||||||| |||||||||| ||| |||||||||||||||||    
T  25485719 agggcccatttggattgaacttatacaaaagagcttatgcaaataaataaatttttatttgttattcatgaccttattaaggtagtttatgaa 25485811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 36423065 - 36423003
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaat 233  Q
    ||||||||||| ||| |||||||||||||||||||||| || || ||||||||||||||||||    
T  36423065 agcttatgcaaataaataagcttttatttattattcataagtttgttaaggtagtttatgaat 36423003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 35897718 - 35897646
Alignment:
Q  160 ttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||| ||||||||| ||| |||| ||||||||||||||||| ||||| | || ||||||||||||    
T  35897718 ttatgcaaaacaacttatgcaaataaataagtttttatttattattcataagcttttcaaagtagtttatgaa 35897646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 4068103 - 4068178
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||| ||||||| ||||| ||||| ||| ||||||||||| |||||||||| ||||| | |||||||||||||||    
T  4068103 agcttttgcaaaatagcttgtgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaa 4068178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 9572696 - 9572755
Alignment:
Q  138 taagggcccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    ||||| ||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||    
T  9572696 taaggccccgtttggattgagcttatgaaaaatagcttatgcaaataaataagcttttat 9572755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 26946206 - 26946127
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagc-ttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||||||||| ||||||| || ||| ||||| |||||| | |||||||| ||||| |||||||||||||||||    
T  26946206 ttgagcttatgcaaaacggcttatgtaaataaataagctttttatgtgttattcataagcttgttaaggtagtttatgaa 26946127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 35282686 - 35282617
Alignment:
Q  163 tgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||| || | | | |||||||||||||||||    
T  35282686 tgcaaaacagcttatgcaaataaataagcgtttatttattatttataaacatgttaaggtagtttatgaa 35282617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 18327515 - 18327587
Alignment:
Q  160 ttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||| ||||||||||||||||| ||| ||||||||||| ||||| |||| ||||| | ||| |||||||||||    
T  18327515 ttattcaaaacagcttatgcaaataaataagcttttatgtattactcataagcttgtcaagatagtttatgaa 18327587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 49971238 - 49971314
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||| ||||||||| ||| ||  | ||||||||||||| || ||||| |||| ||||||||||||    
T  49971238 gagcttatgcaaaacaacttatgcaaataaatattcctttatttattatttataagcttgttaatgtagtttatgaa 49971314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 20169249 - 20169300
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattatt 205  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||| |||||||    
T  20169249 ttgagcttatgaaaaacagcttatgcaaataaataagcttttatgtattatt 20169300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 391153 - 391214
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagc-ttttatttattattcatgagctt 214  Q
    ||||| |||||||||||||||||||||| ||| ||||| |||||| |||||||||| |||||    
T  391153 ttgaggttatgcaaaacagcttatgcaaataaataagctttttatatattattcataagctt 391214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 6337840 - 6337779
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||| || ||| ||||||||||| |||||||||| ||||| | |||||||||||||||    
T  6337840 agcttatgtaaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaa 6337779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 22593337 - 22593378
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    |||||||||||||||||||||||||| ||| |||||||||||    
T  22593337 gagcttatgcaaaacagcttatgcaaataaataagcttttat 22593378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 34177278 - 34177354
Alignment:
Q  33 aatagtcattttagtccctgaatgtgtaacgagg--ccacaataattcctcaatgtatcaaaatttcaaaagagtcc 107  Q
    ||||||||||||||||||||||| ||||||||||  |||||||  |   ||||| |||||||||||||||| |||||    
T  34177278 aatagtcattttagtccctgaatatgtaacgaggagccacaatcgtctttcaatatatcaaaatttcaaaatagtcc 34177354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 10850172 - 10850096
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatg 230  Q
    |||||||||||||||| || || ||||| ||| ||||||||||| |||||||||| || || | || ||||||||||    
T  10850172 ttgagcttatgcaaaatagtttttgcaaataaataagcttttatgtattattcataaggttgtcaacgtagtttatg 10850096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 12256594 - 12256670
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||| |||||| || |||||| |||||||| ||||||| || || || || | ||||||||||||    
T  12256594 gagcttatgcaaaacaacttatgtaaataattatgcttttatatattatttataagattgttgatgtagtttatgaa 12256670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 31134833 - 31134797
Alignment:
Q  29 gggtaatagtcattttagtccctgaatgtgtaacgag 65  Q
    |||||||||||||||| ||||||||||||||||||||    
T  31134833 gggtaatagtcattttggtccctgaatgtgtaacgag 31134797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 32497370 - 32497295
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||  |||||||||||||||| ||| |||| |||||| ||||||| || || || |||||||||||||||||    
T  32497370 gagcttatataaaacagcttatgcaaataaataagtttttatgtattatttataag-tttttaaggtagtttatgaa 32497295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 5347322 - 5347267
Alignment:
Q  144 cccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttattt 199  Q
    ||||||||| ||||||||||| |||| |||||||| || ||| |||||||||||||    
T  5347322 cccgtttggtttgagcttatgaaaaatagcttatgtaaataaataagcttttattt 5347267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 17628343 - 17628398
Alignment:
Q  144 cccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttattt 199  Q
    ||||||||| ||||||||||| |||| |||||||| || ||| |||||||||||||    
T  17628343 cccgtttggtttgagcttatgaaaaatagcttatgtaaataaataagcttttattt 17628398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 35590118 - 35590193
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||| |||||| ||||||||| ||| ||||||||||| |||  ||||| ||||| | ||||| |||||||||    
T  35590118 agcttatgtaaaacaacttatgcaaataaataagcttttatgtatagttcataagcttgtcaaggttgtttatgaa 35590193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 37148191 - 37148116
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||| |||||||||||| ||| ||||| || || ||||||| || ||  | |||||||||||||||||    
T  37148191 agcttatgcaaagcagcttatgcaaataaataagcattaatgtattatttataagtatgttaaggtagtttatgaa 37148116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 37157016 - 37156941
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||| |||||||||||| ||| ||||| || || ||||||| || ||  | |||||||||||||||||    
T  37157016 agcttatgcaaagcagcttatgcaaataaataagcattaatgtattatttataagtatgttaaggtagtttatgaa 37156941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 42591370 - 42591445
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||| ||||||||||| | ||||||| ||||||||||  ||||||| || || || |||||||| ||||||||    
T  42591370 agcttatacaaaacagcttgtacaagtaaataagcttttacatattatttataagtttgttaaggtattttatgaa 42591445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 15515428 - 15515370
Alignment:
Q  174 ttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||| | ||| ||||||||||| |||||||||| ||||| | |||||||||||||||    
T  15515428 ttatgctaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaa 15515370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 37712053 - 37712130
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||| ||| ||||||| |||||||| | | ||||||||||| || ||||||| ||||| | |||||||||||||||    
T  37712053 ttgagctaatgaaaaacagtttatgcaaatgaataagcttttatgta-tattcataagcttgtcaaggtagtttatgaa 37712130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 42363766 - 42363720
Alignment:
Q  144 cccgtttggattgagcttatgcaaaacagcttatgcaagtaattaag 190  Q
    ||||||||||||||||||||| |||| ||||||||||| ||| ||||    
T  42363766 cccgtttggattgagcttatgaaaaagagcttatgcaaataaataag 42363720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 51162438 - 51162384
Alignment:
Q  143 gcccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    |||||||||||||||||||||  |||| || |||||||| ||||||| |||||||    
T  51162438 gcccgtttggattgagcttataaaaaaaagtttatgcaaataattaaacttttat 51162384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 3069938 - 3069877
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||| ||| ||| |||||||| || |||||||||| ||||| | |||||||||||||||    
T  3069938 agcttatacaaataagtaagctttaatgtattattcataagcttgtcaaggtagtttatgaa 3069877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 31378835 - 31378774
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||| ||||||||||| ||||||| |  ||||| | |||||||||||||||    
T  31378835 agcttatgcaaataaataagcttttatatattattaacaagcttgtcaaggtagtttatgaa 31378774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 38444909 - 38444992
Alignment:
Q  29 gggtaatagtcattttagtccctgaatgtgtaacgag--gccacaataattcctcaatgtatcaaaatttcaaaagagtccctaa 111  Q
    ||||||||||||||||||| |||||| ||| || |||  ||||| ||| ||| ||||||||||||||||  |||| |||||||||    
T  38444909 gggtaatagtcattttagttcctgaaagtgcaa-gagcagccactatagttcatcaatgtatcaaaattataaaatagtccctaa 38444992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 48819301 - 48819362
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||| | |||||| || |||||||||| ||||| | |||||||||||||||    
T  48819301 agcttatgcaaataaatgagctttaatgtattattcataagcttgtcaaggtagtttatgaa 48819362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 5243502 - 5243427
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||  |||||||||||||||| ||| |||| |||| | ||||||| || || || |||||||||||||||||    
T  5243502 gagcttatataaaacagcttatgcaaataaataagtttttgtgtattatttataag-tttttaaggtagtttatgaa 5243427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 6541006 - 6541038
Alignment:
Q  32 taatagtcattttagtccctgaatgtgtaacga 64  Q
    |||||||||||||| ||||||||||||||||||    
T  6541006 taatagtcattttaatccctgaatgtgtaacga 6541038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 6728105 - 6728026
Alignment:
Q  29 gggtaatagtcattttagtccctgaatgtgtaacga--ggccacaataattcctcaatgtatcaaaatttcaaaagagtc 106  Q
    |||| ||||||||||| |||||||||||||||||||   | ||||||| | | |||||| ||||||||| ||||| ||||    
T  6728105 gggtgatagtcattttcgtccctgaatgtgtaacgaatagtcacaatagtccttcaatgaatcaaaattccaaaatagtc 6728026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 15791371 - 15791446
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||  ||||||||||||| || ||| |||| |||||| ||||||| || || || |||||||||||||||||    
T  15791371 gagcttatataaaacagcttatgtaaataaataagtttttatgtattatttataag-tttttaaggtagtttatgaa 15791446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 17628523 - 17628448
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||  |||||||||||| ||| ||| |||| |||||| ||||||| || || || |||||||||||||||||    
T  17628523 gagcttatataaaacagcttatacaaataaataagtttttatgtattatttataag-tttttaaggtagtttatgaa 17628448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 34177594 - 34177562
Alignment:
Q  29 gggtaatagtcattttagtccctgaatgtgtaa 61  Q
    |||||||||||||||| ||||||||||||||||    
T  34177594 gggtaatagtcattttggtccctgaatgtgtaa 34177562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 42591547 - 42591495
Alignment:
Q  147 gtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttattt 199  Q
    |||||||||||||||||| |||| |||||||| || ||| |||| ||||||||    
T  42591547 gtttggattgagcttatgaaaaatagcttatgtaaataaataagtttttattt 42591495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 50804263 - 50804299
Alignment:
Q  29 gggtaatagtcattttagtccctgaatgtgtaacgag 65  Q
    |||||||||| |||||||||| |||||||||||||||    
T  50804263 gggtaatagttattttagtccttgaatgtgtaacgag 50804299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 51162256 - 51162332
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||  ||||||||||| ||| ||||| || || ||||||| |  || || |||||||||||||||||    
T  51162256 gagcttatgcaaagtagcttatgcaaataaataagcattaatgtattatttacaagtttgttaaggtagtttatgaa 51162332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 6758605 - 6758690
Alignment:
Q  147 gtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||| ||| ||||| |||||||||||||||||    
T  6758605 gtttggattgagcttatgcaaaacaacttatgcaaataaataagcttttgtttattatccataagcttgttaaggtagtttatgaa 6758690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 29623592 - 29623500
Alignment:
Q  140 agggcccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| |||||||||||||||||||| ||||||||| ||| ||| ||||||||||||||| ||||| || |||| ||||||||||||    
T  29623592 agggcccgtttagattgagcttatgcaaaacaacttatgcaaataaataaccttttatttattatttatgagtttgttaatgtagtttatgaa 29623500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 2040295 - 2040209
Alignment:
Q  146 cgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||||||||||||| |||||  || ||| |||||||||||||||||||||| || || |||||||| ||||||||    
T  2040295 cgtttggattgagcttatgcaaaacaacttatataaataaataagcttttatttattattcataagtttgttaaggtaatttatgaa 2040209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 2255705 - 2255797
Alignment:
Q  140 agggcccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||| ||||||||||||||||||  ||||||||| ||| | ||||||||| ||| |||||| ||||| |||||||| ||||||||    
T  2255705 agggcccgtttgaattgagcttatgcaaaacgacttatgcaaataaatgagcttttatgtatgattcataagcttgttaaggtaatttatgaa 2255797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 8014785 - 8014851
Alignment:
Q  166 aaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||| ||| |||||||||||| ||||||||| ||||| | |||||||||||||||    
T  8014785 aaaacagcttatgcaaataagtaagcttttattcattattcataagcttgtcaaggtagtttatgaa 8014851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 30533965 - 30534043
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||| || || | || ||||||||||||    
T  30533965 ttgagcttgtgcaaaacagcttatgcaaataaataagcttttatgtattattcataagtttgtaaatgtagtttatgaa 30534043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 8010960 - 8011016
Alignment:
Q  141 gggcccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    ||||| |||||||||||||||||| |||| ||||||||||| |||||||||||||||    
T  8010960 gggcctgtttggattgagcttatgaaaaaaagcttatgcaaataattaagcttttat 8011016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 10219536 - 10219623
Alignment:
Q  31 gtaatagtcattttagtccctgaatgtgtaacgag--gccacaataattcctcaatgtatcaaaatttcaaaagagtccctaattgtg 116  Q
    |||||||||||||| ||||||||||||||||||||  ||||||||| | ||| ||||| || ||||||||||| ||| ||| ||||||    
T  10219536 gtaatagtcattttggtccctgaatgtgtaacgagtagccacaatagtcccttaatgtgtcgaaatttcaaaatagttcctgattgtg 10219623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 32675971 - 32675912
Alignment:
Q  173 cttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||| ||| |||||||||||||||||||||| |||||| |||||| |||||||||    
T  32675971 cttatgcaaataaataagcttttatttattattcataagcttcgtaaggttgtttatgaa 32675912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 21025311 - 21025250
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||| ||||||||||| |||||| ||| ||||| |||||||||||||||||    
T  21025311 agcttatgcaaataaataagcttttatgtattatgcataagcttgttaaggtagtttatgaa 21025250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 3211099 - 3211024
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||| ||||||||||||||||||| ||| ||||||||||| ||||| | || ||||| | || ||||||||||||    
T  3211099 agcttgtgcaaaacagcttatgcaaataaataagcttttatgtattactgataagcttgtcaatgtagtttatgaa 3211024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 6776810 - 6776869
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatg 230  Q
    ||||||||||| ||| |||||||||||||| ||| ||| ||||| |||||||||||||||    
T  6776810 agcttatgcaaataaataagcttttatttaatatccataagcttgttaaggtagtttatg 6776869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 23239232 - 23239307
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttat 229  Q
    ||||||||||| |||| | ||||| ||| ||| |||||||||||||||||||||| ||||| |||| || ||||||    
T  23239232 ttgagcttatgaaaaataacttatacaaataaataagcttttatttattattcataagcttgttaacgtggtttat 23239307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 3830020 - 3829942
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||||| |||||||||| ||| || |||||||||| |||||||| |  || ||| |||||||||||||    
T  3830020 ttgagcttatgaaaaacggcttatgcaaataaatacgcttttatttgttattcataaagtttttatggtagtttatgaa 3829942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 10873971 - 10874046
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatga 231  Q
    ||||| |||||||||| ||||||||||  ||| ||||||||||  ||||||| || ||||| ||||||||||||||||    
T  10873971 ttgagattatgcaaaatagcttatgcatataaataagctttta--tattattaataagcttgttaaggtagtttatga 10874046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 21891439 - 21891361
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||||| || ||||||||||| ||| |||| ||| || |||||||||| ||||| | || ||||||||||||    
T  21891439 ttgagcttatgcagaatagcttatgcaaataaataagttttgatatattattcataagcttgtcaatgtagtttatgaa 21891361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 24625836 - 24625914
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||| ||| |||| ||| | ||||||| ||| || |||||||| |||||||||| ||||| |||||||||||||||||    
T  24625836 ttgaggttaggcaagacaacatatgcaaataaatacgcttttatgtattattcataagcttgttaaggtagtttatgaa 24625914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 10687292 - 10687371
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttat---ttattattcatgagcttcttaaggtagtttatg 230  Q
    |||||||||| ||||||||||||||||| ||| |||||||| ||   || |||||||| ||| | |||||||||||||||    
T  10687292 ttgagcttattcaaaacagcttatgcaaataaataagctttgatgtatttttattcataagcctattaaggtagtttatg 10687371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 23239411 - 23239362
Alignment:
Q  148 tttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    ||||||||||||||||| |||| ||||||||||| ||| |||||||||||    
T  23239411 tttggattgagcttatgaaaaatagcttatgcaaataaataagcttttat 23239362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 516101 - 516065
Alignment:
Q  29 gggtaatagtcattttagtccctgaatgtgtaacgag 65  Q
    |||||||||||||||| ||||||||||||||||||||    
T  516101 gggtaatagtcattttggtccctgaatgtgtaacgag 516065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 6632646 - 6632722
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||| ||||||| ||||||||| ||| || |||||||| ||||||| || | ||| |||| ||||||||||||    
T  6632646 gagcttattcaaaacaacttatgcaaataaatatgcttttatgtattatttataaacttgttaatgtagtttatgaa 6632722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 9307572 - 9307536
Alignment:
Q  29 gggtaatagtcattttagtccctgaatgtgtaacgag 65  Q
    ||||| |||||||||||||||||||||||||||||||    
T  9307572 gggtactagtcattttagtccctgaatgtgtaacgag 9307536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 9894753 - 9894829
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||| |||||||||||| |||| ||| ||| ||||||| ||||||| || || || |||||||| ||||||||    
T  9894753 gagcttatacaaaacagcttacgcaaataaataatcttttatgtattatttataagtttgttaaggtattttatgaa 9894829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 21609970 - 21610022
Alignment:
Q  147 gtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttattt 199  Q
    |||||||||||||||||||||||||  |||||||| ||| |||| ||||||||    
T  21609970 gtttggattgagcttatgcaaaacaatttatgcaaataaataagtttttattt 21610022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 6752978 - 6752927
Alignment:
Q  146 cgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    ||||| ||||||||||||| |||| ||||||||||| ||| |||||||||||    
T  6752978 cgtttagattgagcttatgaaaaatagcttatgcaaataaataagcttttat 6752927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 7267763 - 7267838
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||| | ||||| ||||||||||  || ||||||||||| |||||||||| |||||   |||||||||||||||    
T  7267763 agcttaagtaaaacggcttatgcaaacaaataagcttttatgtattattcataagcttgccaaggtagtttatgaa 7267838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 10067831 - 10067741
Alignment:
Q  28 cgggtaatagtcattttagtccctgaatgtgtaacgag--gccacaataattcctcaatgtatcaaaatttcaaaagagtccctaattgtg 116  Q
    |||||||||||||||||||||  |||||||||||| ||   |||||||| |  ||||||||||| |||||| |||| |||| || ||||||    
T  10067831 cgggtaatagtcattttagtctttgaatgtgtaacaagtaaccacaatagtctctcaatgtatcgaaattttaaaatagtctctgattgtg 10067741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 34223442 - 34223497
Alignment:
Q  144 cccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttattt 199  Q
    ||||||||||||||||||||| |||| |||||||| || ||| |||| ||||||||    
T  34223442 cccgtttggattgagcttatgaaaaatagcttatgtaaataaataagtttttattt 34223497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 2034313 - 2034252
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||| ||||||||||| ||||||| || || || | |||||||||||||||    
T  2034313 agcttatgcaaataaataagcttttatgtattatttataagtttgtcaaggtagtttatgaa 2034252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 6752797 - 6752858
Alignment:
Q  147 gtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcat 208  Q
    |||||||| || ||||||||||| |||||||| || ||| |||  |||||||||||||||||    
T  6752797 gtttggatcgaacttatgcaaaaaagcttatgtaaataaataaatttttatttattattcat 6752858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 10054383 - 10054444
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||| ||||||||||| |||||||||| || || | || ||||||||||||    
T  10054383 agcttatgcaaataaataagcttttatgtattattcataagtttgtaaatgtagtttatgaa 10054444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 1468163 - 1468238
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||  |||| ||||||||||| ||| |||| |||||| ||||||| || || || |||||||||||||||||    
T  1468163 gagcttatataaaatagcttatgcaaataaataagtttttatgtattatttat-aggtttttaaggtagtttatgaa 1468238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 9201832 - 9201772
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagctt 214  Q
    ||||||||| |||||||||||||||||| | | ||||||||  | |||||||||| |||||    
T  9201832 ttgagcttacgcaaaacagcttatgcaaatgaataagctttgctgtattattcataagctt 9201772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 10184251 - 10184303
Alignment:
Q  147 gtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttattt 199  Q
    |||||||||||||||||| |||| |||||||  || ||| |||||||||||||    
T  10184251 gtttggattgagcttatgaaaaatagcttatataaataaataagcttttattt 10184303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 10184428 - 10184353
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||  ||||||||||||| || ||| |||| |||||| ||||||| || || || |||||||||||||||||    
T  10184428 gagcttatataaaacagcttatgtaaataaataagtttttatctattatttataag-tttttaaggtagtttatgaa 10184353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 21610148 - 21610072
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||||||||||||| ||| ||    |||||  |||||| || ||||| |||| ||||||||||||    
T  21610148 gagcttatgcaaaacagcttatgcaaataaatatttctttatgaattatttataagcttgttaatgtagtttatgaa 21610072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 25430864 - 25430789
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| |||||||||||| ||| ||| ||||| |||||    ||||||| ||||| | |||||||||||||||    
T  25430864 ttgagcttatgtaaaacagcttatacaaataaataagcatttat---gtattcataagcttgtcaaggtagtttatgaa 25430789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 43)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 22202037 - 22201959
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||||||||||||||||| || ||| ||||||||||| |||||||||| ||||| | |||||||||||||||    
T  22202037 ttgagcttatgcaaaacagcttatgtaaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaa 22201959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 17128263 - 17128341
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| | ||| | || ||||||||||||    
T  17128263 ttgagcttatgcaaaacagcttatgcaaataaataagcttttatgtattattcataaacttatcaaagtagtttatgaa 17128341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 29922290 - 29922212
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||||||||||| |||||||| ||| |||| |||||| |||||||||| ||||| | |||||||||||||||    
T  29922290 ttgagcttatgcaaaacagtttatgcaaataaataagtttttatgtattattcataagcttgtcaaggtagtttatgaa 29922212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 7364410 - 7364335
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttat 229  Q
    ||||||||||| ||||||||| ||||||  || ||||||| |||||||||||||| ||||| ||||||||||||||    
T  7364410 ttgagcttatgtaaaacagctgatgcaaaaaaataagcttctatttattattcataagcttgttaaggtagtttat 7364335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 10537321 - 10537242
Alignment:
Q  153 attgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||| |||||||||||||||| ||| ||||||||||| ||||||| || ||||| | ||| |||||||||||    
T  10537321 attgagcttatgtaaaacagcttatgcaaataaataagcttttatgtattatttataagcttgtcaagatagtttatgaa 10537242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 233
Target Start/End: Complemental strand, 2502827 - 2502741
Alignment:
Q  147 gtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaat 233  Q
    ||||| ||||| ||||||||||| ||||||| ||| |||  ||| ||| ||||||||||||||||||| |||| |||||||||||||    
T  2502827 gtttgaattgaacttatgcaaaagagcttatacaaataaacaagttttaatttattattcatgagcttgttaaagtagtttatgaat 2502741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 42852011 - 42852085
Alignment:
Q  158 gcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||||||| ||| ||| ||||||||||| |||||||||| ||||| | ||| |||||||||||    
T  42852011 gcttatgcaaaacagcttattcaaataaataagcttttatgtattattcataagcttgtcaagatagtttatgaa 42852085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 24030203 - 24030278
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||| ||||||||||||| ||| ||| ||||||||||| |||||||||| ||||| | || ||||||||||||    
T  24030203 agcttatacaaaacagcttatccaaataaataagcttttatgtattattcataagcttgtcaaagtagtttatgaa 24030278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 2878777 - 2878723
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcat 208  Q
    |||||||||||| ||||||||||||||| ||| ||||||||||| ||||||||||    
T  2878777 ttgagcttatgctaaacagcttatgcaaataaataagcttttatctattattcat 2878723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 6217749 - 6217672
Alignment:
Q  32 taatagtcattttagtccctgaatgtgtaacgag--gccacaataattcctcaatgtatcaaaatttcaaaagagtcc 107  Q
    ||||||||||||| |||| |||||||||| |||   ||||||||| | |||||||||||||||||||||||| |||||    
T  6217749 taatagtcattttggtccatgaatgtgtagcgaatagccacaatagtccctcaatgtatcaaaatttcaaaatagtcc 6217672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 13625605 - 13625545
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatga 231  Q
    ||||||||||| ||| || ||||||||||||||||||| ||||| || |||||||||||||    
T  13625605 agcttatgcaaataaatatgcttttatttattattcataagcttgttgaggtagtttatga 13625545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 1473341 - 1473419
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||| || |||| ||||||||| ||| ||||||||||| |||||||||| ||||| | ||| || ||||||||    
T  1473341 ttgagcttatacagaacaacttatgcaaataaataagcttttatgtattattcataagcttgtcaagttaatttatgaa 1473419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 12467269 - 12467327
Alignment:
Q  174 ttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||| ||| ||||||||||| |||||||||| ||||| | |||||||||||||||    
T  12467269 ttatgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaa 12467327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 18602592 - 18602665
Alignment:
Q  158 gcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||| ||| ||||||||||||  ||| ||| ||||||||||||||||| ||||| ||||||||| |||||||    
T  18602592 gcttatgtaaaccagcttatgcaaagaat-aagtttttatttattattcataagcttgttaaggtagcttatgaa 18602665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 1943012 - 1943073
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||||||| |||| |||||| |||||| ||| ||||| | |||||||||||||||    
T  1943012 agcttatgcaagtaaataagtttttatgtattatccataagcttgtcaaggtagtttatgaa 1943073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 20458466 - 20458531
Alignment:
Q  134 acaataagggcccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttattt 199  Q
    |||||| || ||||||||| ||||||||||| |||| |||||||| || ||| |||||||||||||    
T  20458466 acaatagggccccgtttggtttgagcttatgaaaaatagcttatgtaaataaataagcttttattt 20458531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 28625482 - 28625543
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||| ||||||||||  |||||||||| ||||| | |||||||||||||||    
T  28625482 agcttatgcaaataaataagcttttaagtattattcataagcttgtcaaggtagtttatgaa 28625543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 2707858 - 2707822
Alignment:
Q  29 gggtaatagtcattttagtccctgaatgtgtaacgag 65  Q
    |||||||||||||||| ||||||||||||||||||||    
T  2707858 gggtaatagtcattttggtccctgaatgtgtaacgag 2707822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 12987109 - 12987037
Alignment:
Q  160 ttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||| |||| | ||||||||| ||| ||||||||||| |||| ||||| ||||| | |||||||||||||||    
T  12987109 ttatgtaaaagaacttatgcaaataaataagcttttatgtattgttcataagcttgtcaaggtagtttatgaa 12987037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 13060697 - 13060625
Alignment:
Q  160 ttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||| |||| | ||||||||| ||| ||||||||||| |||| ||||| ||||| | |||||||||||||||    
T  13060697 ttatgtaaaagaacttatgcaaataaataagcttttatgtattgttcataagcttgtcaaggtagtttatgaa 13060625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 14243808 - 14243884
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatg 230  Q
    ||||| ||||||||||||||||||| || ||| ||||||| ||| || ||||||| || |  |||||||||||||||    
T  14243808 ttgagattatgcaaaacagcttatgtaaataaataagcttctatgtaatattcataagttgtttaaggtagtttatg 14243884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 15413979 - 15414051
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagttta 228  Q
    |||||||||||||||||||||||||| ||| ||||  || || ||||||| || || || |||||||||||||    
T  15413979 gagcttatgcaaaacagcttatgcaaataaataagtattaatgtattattgataagtttgttaaggtagttta 15414051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 16127049 - 16127136
Alignment:
Q  31 gtaatagtcattttagtccctgaatgtgtaacgag--gccacaataattcctcaatgtatcaaaatttcaaaagagtccctaattgtg 116  Q
    |||||||||||||| |||||| ||||||||| |||  | ||||||| |  ||||| ||||||||||||||||| ||||| | ||||||    
T  16127049 gtaatagtcattttggtccctaaatgtgtaaggagtagtcacaatagtctctcaaagtatcaaaatttcaaaatagtccttgattgtg 16127136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 16902986 - 16903022
Alignment:
Q  29 gggtaatagtcattttagtccctgaatgtgtaacgag 65  Q
    ||||||||||||||||||||||||||||| |||||||    
T  16902986 gggtaatagtcattttagtccctgaatgtataacgag 16903022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 34034944 - 34034912
Alignment:
Q  29 gggtaatagtcattttagtccctgaatgtgtaa 61  Q
    |||||||||||||||||||||||||||||||||    
T  34034944 gggtaatagtcattttagtccctgaatgtgtaa 34034912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 43318990 - 43319066
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||| ||||||||| ||| || |  ||||| ||||||| || ||||| |||| ||||||||||||    
T  43318990 gagcttatgcaaaacaacttatgcaaataaatatgtctttatgtattatttataagcttgttaatgtagtttatgaa 43319066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 11163367 - 11163292
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||||||||| || | | |||| |||||| ||| |||||| ||||| |  ||||||||||||||    
T  11163367 agcttatgcaaaacagcttatgtaaatcaataagtttttatgtatgattcataagcttgtcgaggtagtttatgaa 11163292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 2670060 - 2670138
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||||||| |||||||| |||  || ||||||| || ||||||| || || | |||||||||||||||    
T  2670060 ttgagcttatgtaaaacagtttatgcaaataaacaatcttttatgtactattcataagtttgtcaaggtagtttatgaa 2670138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 41534628 - 41534682
Alignment:
Q  174 ttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagttta 228  Q
    |||||||| ||| ||||||||||| |||||||||| ||||| | |||||||||||    
T  41534628 ttatgcaaataaataagcttttatgtattattcataagcttgtcaaggtagttta 41534682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 42706798 - 42706856
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttat 229  Q
    ||||||||||| ||| ||||||||||  |||||||||| ||||| | ||||||||||||    
T  42706798 agcttatgcaaataaataagcttttaagtattattcataagcttgtcaaggtagtttat 42706856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 42852174 - 42852136
Alignment:
Q  159 cttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  42852174 cttatgcaaaacagcttatgcaactaaataagcttttat 42852136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 11707027 - 11706967
Alignment:
Q  145 ccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattc 206  Q
    ||||||| |||| |||||||||||||||| ||||||| ||| ||||||||||| ||| ||||    
T  11707027 ccgtttgtattg-gcttatgcaaaacagcctatgcaaataaataagcttttatgtatcattc 11706967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 41059873 - 41059812
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||  || ||||||||||| |||||||||| ||||| | ||||| |||||||||    
T  41059873 agcttatgcaaacaaataagcttttatgtattattcataagcttatcaaggttgtttatgaa 41059812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 42558645 - 42558690
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttattt 199  Q
    ||||||||||| |||| ||||||||||| ||| |||||||||||||    
T  42558645 ttgagcttatgaaaaatagcttatgcaaataaataagcttttattt 42558690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 1576620 - 1576691
Alignment:
Q  158 gcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatg 230  Q
    ||||||||||||||||||| |||| ||| ||| ||||||| |||| ||||| ||||| | || ||||||||||    
T  1576620 gcttatgcaaaacagcttaagcaaataaataaacttttatgtatt-ttcataagcttgtcaatgtagtttatg 1576691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 1608195 - 1608124
Alignment:
Q  158 gcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatg 230  Q
    ||||||||||||||||||| |||| ||| ||| ||||||| |||| ||||| ||||| | || ||||||||||    
T  1608195 gcttatgcaaaacagcttaagcaaataaataaacttttatgtatt-ttcataagcttgtcaatgtagtttatg 1608124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 11991294 - 11991350
Alignment:
Q  158 gcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagctt 214  Q
    |||||||||||||| |||||| || ||| ||||||||||| ||||||| || |||||    
T  11991294 gcttatgcaaaacaacttatgtaaataaataagcttttatgtattatttataagctt 11991350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 23159026 - 23159058
Alignment:
Q  29 gggtaatagtcattttagtccctgaatgtgtaa 61  Q
    |||||||||||| ||||||||||||||||||||    
T  23159026 gggtaatagtcactttagtccctgaatgtgtaa 23159058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 29686426 - 29686497
Alignment:
Q  32 taatagtcattttagtccctgaatgtgtaacgag--gccacaataattcctcaatgtatcaaaatttcaaaa 101  Q
    ||||||||| ||| |||| ||||||| ||| |||  | ||||||||| ||||||||||| ||||||||||||    
T  29686426 taatagtcactttggtccatgaatgtataatgagtagtcacaataatccctcaatgtattaaaatttcaaaa 29686497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 32508206 - 32508162
Alignment:
Q  188 aagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||| |||||| | ||| |||||||||||||||||    
T  32508206 aagcttttatttatcattcataaacttgttaaggtagtttatgaa 32508162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 33757075 - 33757150
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||  |||||||||||||||| ||| |||| |||||| ||||||| || || || ||||| |||||||||||    
T  33757075 gagcttatataaaacagcttatgcaaataaataagtttttatgtattatttataag-tttttaagctagtttatgaa 33757150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 40416071 - 40415995
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||| ||||||||| ||| ||| | || || ||||||| || || || ||||||||||| |||||    
T  40416071 gagcttatgcaaaacaacttatgcaaataactaaacattaatgtattatttataagtttgttaaggtagttcatgaa 40415995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 43268704 - 43268644
Alignment:
Q  172 gcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||| ||| ||||||||||| ||||||| || ||||  | |||||||||||||||    
T  43268704 gcttatgcaaataaataagcttttatgtattattaataagctggtcaaggtagtttatgaa 43268644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 3876371 - 3876286
Alignment:
Q  147 gtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||||||||| |||||||||||||| || ||| | |||||||||||||||||||| | ||  |||||||||||||||||    
T  3876371 gtttggattgagcttatacaaaacagcttatgtaaataaattagcttttatttattattcataatctagttaaggtagtttatgaa 3876286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 40581178 - 40581100
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||| ||||||| || ||||| | |||||||||||||||    
T  40581178 ttgagcttatgcaaaacaacttatgcaaataaataagcttttatgtattattaataagcttgtcaaggtagtttatgaa 40581100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 51409378 - 51409456
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| |||| ||||||||||| ||| ||| ||||||||||||||||||||| || | |||||||||||||||    
T  51409378 ttgagcttatggaaaatagcttatgcaaataaataatcttttatttattattcatgagtttgtcaaggtagtttatgaa 51409456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 22809295 - 22809216
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagc-ttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||| |||||||||||||||||||||| ||| ||||| |||||| |||||||||| ||||| | |||||||||||||||    
T  22809295 ttgaggttatgcaaaacagcttatgcaaataaataagctttttatatattattcataagcttgtcaaggtagtttatgaa 22809216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 34707814 - 34707736
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||||| |||| | || ||  ||||||||||| |||||||||| ||||| |||||||||||||||||    
T  34707814 ttgagcttatgcaaaacaacttacgtaaatatataagcttttatgtattattcataagcttgttaaggtagtttatgaa 34707736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 46848479 - 46848399
Alignment:
Q  29 gggtaatagtcattttagtccctgaatgtgtaacgag--gccacaataattcctcaatgtatcaaaatttcaaaagagtcc 107  Q
    |||||||||||| ||| |||||||||||||||| |||  | || |||| |||||||||||||||||||||||||| |||||    
T  46848479 gggtaatagtcactttggtccctgaatgtgtaatgagtagtcaaaatagttcctcaatgtatcaaaatttcaaaatagtcc 46848399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 25341267 - 25341348
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattat---tcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| |||||||| ||||||| ||| |||||||| |||||||||   |||| ||||| |||||||||||||||||    
T  25341267 ttgagcttatgtaaaacagcatatgcaaataaataagctttcatttattattactcataagcttgttaaggtagtttatgaa 25341348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 33946643 - 33946592
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattatt 205  Q
    |||||||||||||||| ||||||||||| ||| |||||||||||||||||||    
T  33946643 ttgagcttatgcaaaatagcttatgcaaataaataagcttttatttattatt 33946592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 53218138 - 53218063
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||||||| ||||||| | ||| |||| |||||| |||||||||| ||||| | |||||||||||||||    
T  53218138 agcttatgcaaaacaacttatgcgaataaataagattttatgtattattcataagcttgtcaaggtagtttatgaa 53218063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 11528876 - 11528953
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatga 231  Q
    |||| ||||||||||||| |||||| |||||| ||||||||||| |||||||||| |  || |||| |||||||||||    
T  11528876 ttgaacttatgcaaaacaacttatgtaagtaaataagcttttatgtattattcataaatttgttaatgtagtttatga 11528953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 10448761 - 10448837
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||| ||||||||| ||| || || ||||| ||||||| || ||||| |||| ||||||||||||    
T  10448761 gagcttatgcaaaacaacttatgcaaataaatatgcctttatgtattatttataagcttgttaatgtagtttatgaa 10448837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 585008 - 585083
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||| ||||||  |||||||| ||| |||||||||||  ||||||||  |||||||| ||||||||||||||    
T  585008 agcttatgtaaaacacattatgcaaataaataagcttttatgcattattcaaaagcttcttgaggtagtttatgaa 585083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 47199706 - 47199783
Alignment:
Q  32 taatagtcattttagtccct-gaatgtgtaacgag--gccacaataattcctcaatgtatcaaaatttcaaaagagtc 106  Q
    ||||||| | |||||||||| |||||||||| |||  | ||||||||||| |||||||||||||||||||||| ||||    
T  47199706 taatagttactttagtcccttgaatgtgtaatgagaagtcacaataattcttcaatgtatcaaaatttcaaaatagtc 47199783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 3845840 - 3845917
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatga 231  Q
    |||||||||||||| |||| |||  ||| ||| ||||||||||| |||||||||| ||||| | ||| ||||||||||    
T  3845840 ttgagcttatgcaacacagattacacaaataaataagcttttatatattattcataagcttgtcaagctagtttatga 3845917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 32900812 - 32900751
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||  |||||||||||||||||||||| | ||| |||||||||||| ||||    
T  32900812 agcttatgcaattatataagcttttatttattattcataaacttgttaaggtagtttgtgaa 32900751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 33946468 - 33946521
Alignment:
Q  144 cccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    ||||||||||||||||||||| |||| ||||||||||| ||| | |||||||||    
T  33946468 cccgtttggattgagcttatgaaaaatagcttatgcaaataaatgagcttttat 33946521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 38524252 - 38524203
Alignment:
Q  148 tttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    ||||||||||||||||| |||| ||||||||||| ||| |||||||||||    
T  38524252 tttggattgagcttatgaaaaagagcttatgcaaataaataagcttttat 38524203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 43080018 - 43079957
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||| ||||||||||| | |||||||| ||||| | |||||||||||||||    
T  43080018 agcttatgcaaataaataagcttttatgtgttattcataagcttgtcaaggtagtttatgaa 43079957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 52421225 - 52421164
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||| |||| ||| ||||||||||| |||||||||| ||||| | |||||||||||||||    
T  52421225 agcttacgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaa 52421164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 4974473 - 4974426
Alignment:
Q  150 tggattgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    ||||||||||||||| |||| ||||||||||| ||| |||||||||||    
T  4974473 tggattgagcttatgaaaaagagcttatgcaaataaataagcttttat 4974426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 14984407 - 14984492
Alignment:
Q  32 taatagtcattttagtccctgaatgtgtaacgag--gccacaataattcctcaatgtatcaaaatttcaaaagagtccctaattgtg 116  Q
    ||||||||||||| |||| |||||||||||||||  | ||||||| | ||||||| |||| ||||||||||| | ||||| ||||||    
T  14984407 taatagtcattttggtcc-tgaatgtgtaacgagtagtcacaatagtccctcaatatatcgaaatttcaaaatactccctgattgtg 14984492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 43837080 - 43837115
Alignment:
Q  29 gggtaatagtcattttagtccctgaatgtgtaacga 64  Q
    |||||||||||||||||||| |||||||||||||||    
T  43837080 gggtaatagtcattttagtcactgaatgtgtaacga 43837115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 10272110 - 10272168
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttc 215  Q
    ||||||||||||||| || |||||| ||| ||| ||||||| |||||||||| ||||||    
T  10272110 agcttatgcaaaacaactcatgcaaataaataaacttttatgtattattcataagcttc 10272168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 21296751 - 21296829
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||| ||||||||||||  |||||||| ||| |||| |||||| ||||||||||  | || | |||||||||||||||    
T  21296751 ttgagattatgcaaaacaatttatgcaaataaataagtttttatctattattcatacgtttatcaaggtagtttatgaa 21296829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 24255218 - 24255283
Alignment:
Q  30 ggtaatagtcattttagtccctgaatgtgtaacga--ggccacaataattcctcaatgtatcaaaa 93  Q
    |||||||||||||||| || ||||||||| |||||  || || |||| ||||||||||||||||||    
T  24255218 ggtaatagtcattttactctctgaatgtgaaacgagtggtcataatagttcctcaatgtatcaaaa 24255283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 29270346 - 29270424
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||||| |||||   | ||| ||||||||||| |||||||||| ||||| | ||| || ||||||||    
T  29270346 ttgagcttatgcaaaacaacttataggaataaataagcttttatgtattattcataagcttttcaagataatttatgaa 29270424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 32901242 - 32901196
Alignment:
Q  161 tatgcaaaacagcttatgcaagtaattaagcttttatttattattca 207  Q
    ||||||||||| |||||| || ||| |||||||||||||||||||||    
T  32901242 tatgcaaaacaacttatgtaaataaataagcttttatttattattca 32901196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 621916 - 621879
Alignment:
Q  79 ctcaatgtatcaaaatttcaaaagagtccctaattgtg 116  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  621916 ctcaatgtatcaaaatttcaaaatagtccctaactgtg 621879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 32901066 - 32901103
Alignment:
Q  144 cccgtttggattgagcttatgcaaaacagcttatgcaa 181  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  32901066 cccgtttggattgagcttatgaaaaatagcttatgcaa 32901103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 43376859 - 43376810
Alignment:
Q  148 tttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    ||||||||||||||||| |||| ||||||||||| ||| |||| ||||||    
T  43376859 tttggattgagcttatgaaaaagagcttatgcaactaaataagtttttat 43376810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 52021248 - 52021309
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||| || |||||||| |||||||||| || || | |||||||||||||||    
T  52021248 agcttatgcaaataaatatgcttttatgtattattcataagattgtcaaggtagtttatgaa 52021309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 2086790 - 2086714
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||| |||||||||||| || ||| ||| ||||||| ||||||| || | ||| | ||||| |||||||||    
T  2086790 gagcttatgctaaacagcttatgtaaataaataaacttttatgtattatttataatcttgtaaaggtggtttatgaa 2086714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 4257400 - 4257325
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||  |||||| ||||||||| ||| |||| |||||| ||||||| || || || |||||||||||||||||    
T  4257400 gagcttatataaaacaacttatgcaaataaataagtttttatgtattatttataagttt-ttaaggtagtttatgaa 4257325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 4974298 - 4974374
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||||| |||||||||||| ||| |||||  | || ||||||| || | |||  ||||||||||||||||    
T  4974298 gagcttatgcaaagcagcttatgcaaataaataagcactaatgtattatttataaacttgctaaggtagtttatgaa 4974374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 20936264 - 20936312
Alignment:
Q  68 cacaataattcctcaatgtatcaaaatttcaaaagagtccctaattgtg 116  Q
    ||||||||||  ||||||||||||||||| |||| |||| |||||||||    
T  20936264 cacaataatttatcaatgtatcaaaatttgaaaatagtctctaattgtg 20936312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 23555469 - 23555521
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattc 206  Q
    |||||||||| | |||||| |||||||| ||| ||||||||||| ||||||||    
T  23555469 ttgagcttatacgaaacagtttatgcaaataaataagcttttatgtattattc 23555521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 29830869 - 29830793
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||| |||||||| |||||||| ||| |||| |||||| ||||||  ||  | || |||||||||||||||||    
T  29830869 gagcttatacaaaacagtttatgcaaataaataagtttttatgtattatctatatgtttgttaaggtagtttatgaa 29830793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 53261695 - 53261739
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatt 198  Q
    ||||||||||| |||| ||||||||||| ||| ||||||||||||    
T  53261695 ttgagcttatgaaaaatagcttatgcaattaaataagcttttatt 53261739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 230
Target Start/End: Complemental strand, 11408 - 11325
Alignment:
Q  147 gtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatg 230  Q
    |||||||||  |||||| ||||||| ||||||||| ||| |||||||||||||||||| ||| ||||| |||||||| ||||||    
T  11408 gtttggattaggcttatacaaaacaacttatgcaaataaataagcttttatttattatccattagcttgttaaggtaatttatg 11325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 32131425 - 32131504
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaat 233  Q
    |||||||||||||||||||||||||||| ||| |||||||||||  ||||||| | || || | ||||||||||||||||    
T  32131425 ttgagcttatgcaaaacagcttatgcaaataaataagcttttatgcattattcctaagtttgtcaaggtagtttatgaat 32131504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 26047057 - 26046979
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| |||||| |||||||||  || ||||||||||||||||||| |  ||||| || ||||||||||||||    
T  26047057 ttgagcttatgtaaaacaacttatgcaaaaaagtaagcttttatttattattaacaagcttgttgaggtagtttatgaa 26046979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 32924313 - 32924235
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||||||||||||| | ||| || |||||||||| ||||| || ||||| || | ||||||||||||    
T  32924313 ttgagcttatgcaaaacagcttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttatgaa 32924235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 28879060 - 28879121
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||| ||||||||||| |||||||||| ||||| | |||||||||||||||    
T  28879060 agcttatgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttatgaa 28879121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 32975689 - 32975750
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||| ||||||||||| |||||||||| ||||| | |||||||||||||||    
T  32975689 agcttatgcaaataaataagcttttatatattattcataagcttgtcaaggtagtttatgaa 32975750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 38895661 - 38895722
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||  || ||| |||||||||||||||||| ||||| |||||||||||||||||    
T  38895661 agcttatgcaaaaaaataaacttttatttattattcataagcttgttaaggtagtttatgaa 38895722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 19925546 - 19925616
Alignment:
Q  158 gcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagttta 228  Q
    |||||| ||||||||||||||||| ||| |||||||||| |||||||| || || || |||||||| ||||    
T  19925546 gcttatacaaaacagcttatgcaaataaataagcttttaattattatttataagtttgttaaggtatttta 19925616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 30974161 - 30974104
Alignment:
Q  140 agggcccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    |||||| |||||||||| ||||||| |||| ||||||||||| ||| |||||||||||    
T  30974161 agggcctgtttggattgtgcttatgaaaaagagcttatgcaaataaataagcttttat 30974104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 35453412 - 35453473
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||| ||||||||||| |||||||||| || || | |||||||||||||||    
T  35453412 agcttatgcaaataaataagcttttatgtattattcataagtttatcaaggtagtttatgaa 35453473  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 2669819 - 2669763
Alignment:
Q  141 gggcccgtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    ||||| |||||||||||||||||| |||| |||||||| || ||| |||||||||||    
T  2669819 gggcctgtttggattgagcttatgaaaaagagcttatgaaaataaataagcttttat 2669763  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 42102094 - 42102169
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||  |||||||||||||||| ||| |||| |||||| ||||||| || || || |||||||||||||||||    
T  42102094 gagcttatataaaacagcttatgcaaataaataagtttttatgtattatttataag-tttttaaggtagtttatgaa 42102169  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 13131418 - 13131469
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcat 208  Q
    |||||||||||||||  |||||||| ||| ||||||||||| ||||||||||    
T  13131418 agcttatgcaaaacaaattatgcaaataaataagcttttatgtattattcat 13131469  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 16706028 - 16706071
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    |||||||||||||||||||||||||||| ||| || ||||||||    
T  16706028 ttgagcttatgcaaaacagcttatgcaaataaatacgcttttat 16706071  T

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Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 17488302 - 17488212
Alignment:
Q  29 gggtaatagtcattttagtccctgaatgtgtaacgag--gccacaataattcctcaatgtatcaaaatttcaaaagagtccctaattgtga 117  Q
    |||||| |||||||||  |||||||||||||||| ||  | ||||||| | |||||||||| | ||||||||||| ||||| | |||||||    
T  17488302 gggtaacagtcattttgctccctgaatgtgtaacaagtagtcacaatagtccctcaatgtagcgaaatttcaaaatagtccttgattgtga 17488212  T

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Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 19327855 - 19327906
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcat 208  Q
    ||||||||||||||| ||||||||| ||| ||| ||||||| ||||||||||    
T  19327855 agcttatgcaaaacaacttatgcaaataaataaacttttatgtattattcat 19327906  T

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Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 29243152 - 29243090
Alignment:
Q  166 aaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttat 229  Q
    |||||||||||||||| ||| ||||||||||| ||||||| || || || ||||||||||||||    
T  29243152 aaaacagcttatgcaaataaataagcttttatgtattatttataag-tttttaaggtagtttat 29243090  T

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Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 45548251 - 45548168
Alignment:
Q  149 ttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||||||||||||| | || ||| || ||| || |||||||||| |||||||  ||||| ||||  |||||||||||    
T  45548251 ttggattgagcttatgcaaaataactaatgaaaataaatacgcttttattttttattcacaagcttgttaaaatagtttatgaa 45548168  T

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Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 16706201 - 16706147
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcat 208  Q
    ||||||||||||||||| |||||||||| ||| || | |||||| ||||||||||    
T  16706201 ttgagcttatgcaaaacggcttatgcaaataaatatgtttttatgtattattcat 16706147  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 24350600 - 24350542
Alignment:
Q  174 ttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||| ||||||||||||||| |||||||||| ||||| | || ||| ||||||||    
T  24350600 ttatgcaaataattaagcttttatatattattcataagcttgtcaacgtaatttatgaa 24350542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 41145482 - 41145418
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttat---tattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||| |||||||||||||||   ||||||| || || |||||||||||||||||    
T  41145482 agcttatgcaaataaataagcttttatttattattattcataagtttgttaaggtagtttatgaa 41145418  T

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Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 2289970 - 2289913
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagttta 228  Q
    ||||||||||| ||| |||| ||||||||||||| ||| ||||| ||||| |||||||    
T  2289970 agcttatgcaaataaataagtttttatttattatccataagcttgttaagatagttta 2289913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 23357481 - 23357405
Alignment:
Q  42 tttagtccctgaatgtgtaacgag--gccacaataattcctcaatgtatcaaaatttcaaaagagtccctaattgtg 116  Q
    ||||||| |||||||||||| |||  | |||||||||  || |||||||| ||||||||||||||| | ||||||||    
T  23357481 tttagtcgctgaatgtgtaatgagtagtcacaataatctcttaatgtatctaaatttcaaaagagtgcttaattgtg 23357405  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 32213106 - 32213045
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| ||| ||||||||||| |||||||||| ||||| | | | |||||||||||    
T  32213106 agcttatgcaaataaataagcttttatgtattattcataagcttgtcaggttagtttatgaa 32213045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 34286647 - 34286586
Alignment:
Q  171 agcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||| || ||| ||||||||||| |||||||||| ||||| | |||||||||| ||||    
T  34286647 agcttatgtaaataaataagcttttatgtattattcataagcttgtcaaggtagtttgtgaa 34286586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 35168509 - 35168464
Alignment:
Q  187 taagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||||| |||||||||| ||||| | |||||||||||||||    
T  35168509 taagcttttatgtattattcataagcttgtcaaggtagtttatgaa 35168464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 2563521 - 2563473
Alignment:
Q  149 ttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttat 197  Q
    |||||||||||||||| |||| ||||||| ||| |||||| ||||||||    
T  2563521 ttggattgagcttatgaaaaagagcttatacaaataattatgcttttat 2563473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 12607067 - 12607142
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||  |||||||| ||||||| ||| |||| |||||| ||||||| || || || |||||||||||||||||    
T  12607067 gagcttatataaaacagcatatgcaaataaataagtttttatgtattatttataagttt-ttaaggtagtttatgaa 12607142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 14942411 - 14942487
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||| |||||| |||||| |  ||| ||||||||| | ||||||| || ||||| ||||| |||||||||||    
T  14942411 gagcttatgtaaaacaacttatgtatataaataagcttttgtgtattatttataagcttgttaagttagtttatgaa 14942487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 38338949 - 38338874
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||  |||||||||||||||| ||| |||| |||||  ||||||| || || || |||||||||||||||||    
T  38338949 gagcttatataaaacagcttatgcaaataaataagtttttaaatattatttataag-tttttaaggtagtttatgaa 38338874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 42363415 - 42363340
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    ||||||||  |||| ||||||||||| ||| |||| |||||| ||||||| || || || |||||||||||||||||    
T  42363415 gagcttatataaaatagcttatgcaaataaataagtttttatgtattatttataag-tttttaaggtagtttatgaa 42363340  T

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Target: scaffold1367 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 230
Target Start/End: Original strand, 1036 - 1119
Alignment:
Q  147 gtttggattgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatg 230  Q
    |||||||||  |||||| ||||||| ||||||||| ||| |||||||||||||||||| ||| || || |||||||| ||||||    
T  1036 gtttggattaggcttatacaaaacaacttatgcaaataaataagcttttatttattatccataagattgttaaggtaatttatg 1119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 24733 - 24810
Alignment:
Q  157 agcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagct--tcttaaggtagtttatgaa 232  Q
    |||||| |||||||||||||||||| ||| ||||||||||| |||||||||| ||||  ||  |||||||||||||||    
T  24733 agcttaagcaaaacagcttatgcaaataaataagcttttatgtattattcataagcttgtcaaaaggtagtttatgaa 24810  T

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Target: scaffold0012 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 178485 - 178563
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||| ||||| | ||||| ||||||||| ||| ||||||||||| ||||||| || || ||||||||||| ||||||||    
T  178485 ttgaacttatactaaacaacttatgcaaataaataagcttttatgtattatttataagtttcttaaggtattttatgaa 178563  T

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Target: scaffold0057 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 43917 - 43842
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttat 229  Q
    |||||||||| ||||||||| ||||||| ||| |||| |||||| |||||||||  ||||| |  |||||||||||    
T  43917 ttgagcttatacaaaacagcatatgcaaataaataagtttttatgtattattcaaaagcttgtcgaggtagtttat 43842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 24489 - 24418
Alignment:
Q  154 ttgagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtt 226  Q
    |||||||| | ||||||||||||||||| ||| | ||||| ||| |||||||||| ||||| | |||||||||    
T  24489 ttgagcttctacaaaacagcttatgcaaataaat-agcttgtatgtattattcataagcttgtcaaggtagtt 24418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1088 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1088
Description:

Target: scaffold1088; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 1281 - 1357
Alignment:
Q  156 gagcttatgcaaaacagcttatgcaagtaattaagcttttatttattattcatgagcttcttaaggtagtttatgaa 232  Q
    |||||||||||||||| ||||||||| | | ||||  || || ||||||| || || || |||||||||||||||||    
T  1281 gagcttatgcaaaacaacttatgcaaatgaataaggattaatatattatttataagtttgttaaggtagtttatgaa 1357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 4231 - 4195
Alignment:
Q  145 ccgtttggattgagcttatgcaaaacagcttatgcaa 181  Q
    |||||||||||||||||||| |||| |||||||||||    
T  4231 ccgtttggattgagcttatgaaaaatagcttatgcaa 4195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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