View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17222_low_45 (Length: 248)
Name: NF17222_low_45
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 45436084 - 45435863
Alignment:
| Q |
11 |
caaaggagttggaagatttgtcgttagttgaaccaaaggtaaaacctttggcaccgaccaacaacccttcatcatcatcatccaagtcagaatcatcctt |
110 |
Q |
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| T |
45436084 |
caaaggagttggaagatttgttgttagttgaaccaaaggtaaaacatttggcaccgaccaacaacccttcatcatcatcatccaaatcagaatcatcctt |
45435985 |
T |
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| Q |
111 |
aaactctctgaactcagcttcgaagtcattgtcaagggaaaacggttttctggaactggatttcctcaaattgggccacaacatgacggcggtgacacgg |
210 |
Q |
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| T |
45435984 |
aaactctctgaactcagcttcgaagtcattgtcaaggaaaaacggttttctggaactggatttcctcaaattgggccacaacatgtcggcggtgacacgg |
45435885 |
T |
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| Q |
211 |
cgggaaccacccaccaccgccg |
232 |
Q |
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|||||||||||||||||||||| |
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| T |
45435884 |
cgggaaccacccaccaccgccg |
45435863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 232
Target Start/End: Original strand, 8113070 - 8113276
Alignment:
| Q |
44 |
caaaggtaaaacctttggcaccgaccaacaacccttcatcatca---------------tcatccaagtcagaatcatccttaaactctctgaactcagc |
128 |
Q |
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| T |
8113070 |
caaaggtgaaacctttgacaccgaccaacaacccttcatcatcatcttcatcctcgtcttcatcaaaatcagaatcatccttaaactctctgaacccagc |
8113169 |
T |
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| Q |
129 |
ttcgaagtcattgtcaagggaaaacggttttctggaactggatt---tcctcaaattgggccacaacatgacggcggtgacacggcgggaaccacccacc |
225 |
Q |
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| T |
8113170 |
ctcgaaatcatcgtcaagcaaaaaaggtttccttgaacttggtttcctcctcaaattcggccagaggatatccgctgtgacacggcgggaaccacccacc |
8113269 |
T |
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| Q |
226 |
accgccg |
232 |
Q |
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|||||| |
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| T |
8113270 |
gccgccg |
8113276 |
T |
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