View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17222_low_46 (Length: 247)
Name: NF17222_low_46
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 52770716 - 52770933
Alignment:
| Q |
13 |
aaaatttctaagcgtttagaacaatgggtacaaaagtatctcctcttgatctgaaagcacataggtaaaaagcagagcttggattgaacctcaacatcca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52770716 |
aaaatttctaagcgtttagaacaatgggtacaaaagtatctcctcttgatctgaaagcacataggtaaaaagcagagcttggattgaacctcaacatcca |
52770815 |
T |
|
| Q |
113 |
tggcttcaactttgccaccacagtaaggacaagaaccaggtgcttgttgtcttctcaattccttctgttgtctctcacaaacgtaagacaaccgcatttt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52770816 |
tggcttcaactttgccaccacagtaaggacaagaaccaggtgcttgttgtcttctcaattccttctgttgtctctcacaaacgtaagacaaccgcatttt |
52770915 |
T |
|
| Q |
213 |
tctccacctgctacaact |
230 |
Q |
| |
|
|||||||||||| ||||| |
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|
| T |
52770916 |
tctccacctgctgcaact |
52770933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 52764713 - 52764930
Alignment:
| Q |
13 |
aaaatttctaagcgtttagaacaatgggtacaaaagtatctcctcttgatctgaaagcacataggtaaaaagcagagcttggattgaacctcaacatcca |
112 |
Q |
| |
|
||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52764713 |
aaaatttctaagcgtctagaacaaagagtacaaaagtatttcctcttgatctgaaagcacataggtaagaagcagagcttggattgaacctcaacatcca |
52764812 |
T |
|
| Q |
113 |
tggcttcaactttgccaccacagtaaggacaagaaccaggtgcttgttgtcttctcaattccttctgttgtctctcacaaacgtaagacaaccgcatttt |
212 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || ||||||| ||||||||||||||||||||||||||| |
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| T |
52764813 |
tggcttcaactttgccaccacaataaggacaagaaccaggtgcttgttgtcttcccaattctttttgttgtccctcacaaacgtaagacaaccgcatttt |
52764912 |
T |
|
| Q |
213 |
tctccacctgctacaact |
230 |
Q |
| |
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||||| ||||| ||||| |
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| T |
52764913 |
tctcctgctgctgcaact |
52764930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 178
Target Start/End: Complemental strand, 16640074 - 16639949
Alignment:
| Q |
53 |
tcctcttgatctgaaagcacataggtaaaaagcagagcttggattgaacctcaacatccatggcttcaactttgccaccacagtaaggacaagaaccagg |
152 |
Q |
| |
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||||||| |||| ||| |||||||| ||||| || | | | |||| | |||||||||||| |||||||||||||||||||| ||||||||| |||| | |
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| T |
16640074 |
tcctcttaatcttaaaacacataggcaaaaaacaaaacctccattgcatctcaacatccatagcttcaactttgccaccacaataaggacaacaacctga |
16639975 |
T |
|
| Q |
153 |
tgcttgttgtcttctcaattccttct |
178 |
Q |
| |
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||||| |||||||| |||||||||| |
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|
| T |
16639974 |
tgctttttgtcttcctaattccttct |
16639949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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