View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17222_low_47 (Length: 237)
Name: NF17222_low_47
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4284446 - 4284224
Alignment:
| Q |
1 |
tgaggtttatagcactgattttggttgtggaaaaccaaagaaagttgaaatggtttcaatagatagaactggtgctttttctctttcggatagtagaaat |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||| || |||||||| |
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| T |
4284446 |
tgaggtttatagtactgattttggttgtggaaaaccaaaaaaagttgaaatggtttcaatagatagaactggtgccttttgtctttctgactgtagaaat |
4284347 |
T |
|
| Q |
101 |
ggtgatggtgttgagatgggttttgtgtctaacaaaaaagcaatggaagcttttgcttcgctctttgtcaaaggcattgcatcttgagtttcatcatgta |
200 |
Q |
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||||||||||||||||| ||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4284346 |
ggtgatggtgttgagataggtttcgtgtctaactaaaaagcaatggaagtttttgcttcgctctttgtcaaaggcattgcatcttgagtttcttcatgtg |
4284247 |
T |
|
| Q |
201 |
tatgtgt--actttattggtttg |
221 |
Q |
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||||||| |||||||||||||| |
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| T |
4284246 |
tatgtgtaaactttattggtttg |
4284224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 4289145 - 4288956
Alignment:
| Q |
1 |
tgaggtttatagcactgattttggttgtggaaaaccaaagaaagttgaaatggtttcaatagatagaactggtgctttttctctttcggatagtagaaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| ||||||| |
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| T |
4289145 |
tgaggtttatagcactgattttggttgtggaaaaccaaagaaagttgaaatggtttcaatagatagaactggtgccttttgtctttctgattgtagaaag |
4289046 |
T |
|
| Q |
101 |
ggtgatggtgttgagatgggttttgtgtctaacaaaaaagcaatggaagcttttgcttcgctctttgtcaaaggcattgcatcttgagtt |
190 |
Q |
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| T |
4289045 |
ggtgatggtgttgagataggttttgtgtctaacaaaaaagcaatggaatcttttgcttcgctctttgtcaaaggcattgcatcctgagtt |
4288956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 4261032 - 4261205
Alignment:
| Q |
1 |
tgaggtttatagcactgattttggttgtggaaaaccaaagaaagttgaaatggtttcaatagatagaactggtgctttttctctttcggatagtagaaat |
100 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
4261032 |
tgaggtttatagtactgattttggatgtggaaaaccaaaaaaagttgaaatggtttcaatagatagaactggtgctttttgtctttctgatagtagaaat |
4261131 |
T |
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| Q |
101 |
ggtgatggtgttgagatgggttttgtgtctaacaaaaaagcaatggaagcttttgcttcgctctttgtcaaagg |
174 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4261132 |
ggtgatggtgttgagataggttttgtgtctaacaaaaaagcaatggaagcttttgcttcgctctttgtcaaagg |
4261205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 4297740 - 4297533
Alignment:
| Q |
1 |
tgaggtttatagcactgattttggttgtggaaaaccaaagaaagttgaaatggtttcaatagatagaactggtgctttttctctttcggatagtagaaat |
100 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||| |||| |||||| ||| ||||||| |
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| T |
4297740 |
tgaggtttatagtactgattttggatgtggaaaaccaaagaaagttgaaatggtttctatagatagaattggtgccttttgtctttctgattgtagaaag |
4297641 |
T |
|
| Q |
101 |
ggtgatggtgttgagatgggttttgtgtctaacaaaaaagcaatggaagcttttgcttcgctctttgtcaaaggcattgcatcttgagtttcatcatgta |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |
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| T |
4297640 |
ggtgatggtgttgagataggttttgtgtctaacaaaaaagcaatggaagcttttgcttcgctctttgtcaaaggaattgcatcatgagtttctacatgtg |
4297541 |
T |
|
| Q |
201 |
tatgtgta |
208 |
Q |
| |
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|||||||| |
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| T |
4297540 |
tatgtgta |
4297533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 4266578 - 4266766
Alignment:
| Q |
1 |
tgaggtttatagcactgattttggttgtggaaaaccaaagaaagttgaaatggtttcaatagatagaactggtgctttttctctttcggatagtagaaat |
100 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | ||||||||||||| ||| |
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| T |
4266578 |
tgaggtttatagtactgactttggttgtggaaaaccaaagaaagttgaaatggtttctatagatagaactggtgcttattgtgtttcggatagtagtaat |
4266677 |
T |
|
| Q |
101 |
ggtgatggtgttgagatgggttttgtgtctaacaaaaaagcaatggaagcttttgcttcgctctttgtcaaaggcattgcatcttgagt |
189 |
Q |
| |
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||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |||| ||||||||| |
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| T |
4266678 |
ggtgatggtgttgagataggttttgtgtctacgaaaaaagcaatggaagcctttgcttctctctttgtcaaagggattggatcttgagt |
4266766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 4255441 - 4255252
Alignment:
| Q |
1 |
tgaggtttatagcactgattttggttgtggaaaaccaaagaaagttgaaatggtttcaatagatagaactggtgctttttctctttcggatagtagaaat |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||| ||| ||| ||||||||| |||| ||||| ||| |||||||| |
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| T |
4255441 |
tgaggtttatagtactgattttggttgtggaaaaccgaagaaagtcgaaattgtttctataaataaaactggtgccttttgtctttaagattgtagaaat |
4255342 |
T |
|
| Q |
101 |
ggtgatggtgttgagatgggttttgtgtcta-acaaaaaagcaatggaagcttttgcttcgctctttgtcaaaggcattgcatcttgagt |
189 |
Q |
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||||||||||||||||| || || |||| || | ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
4255341 |
ggtgatggtgttgagataggattcgtgtttacaaaaaaaagcaatggaagcctttgcttttctctttgtcaaaggcattgcatcttgagt |
4255252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 4257705 - 4257616
Alignment:
| Q |
1 |
tgaggtttatagcactgattttggttgtggaaaaccaaagaa---agttgaaatggtttcaatagatagaactggtgctttttctctttc |
87 |
Q |
| |
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||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||| |||||| |
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| T |
4257705 |
tgaggattatagtactgattttggttgtggaaaaccaaagaaattagttgaaatggtttctatagatagaactggtgacttttgtctttc |
4257616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 4261645 - 4261703
Alignment:
| Q |
165 |
ttgtcaaaggcattgcatcttgagtttcatcatgtatatgtgt--actttattggtttg |
221 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
4261645 |
ttgtcaaaggcattgcatcttgagtttcatcatgtgtatgtgtagactttattggtttg |
4261703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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