View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17222_low_6 (Length: 544)

Name: NF17222_low_6
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17222_low_6
NF17222_low_6
[»] chr7 (2 HSPs)
chr7 (20-529)||(13783179-13783684)
chr7 (270-301)||(5609979-5610010)
[»] scaffold0251 (1 HSPs)
scaffold0251 (20-529)||(2490-2995)
[»] chr5 (3 HSPs)
chr5 (20-524)||(13065702-13066202)
chr5 (20-529)||(8724018-8724523)
chr5 (154-194)||(42764733-42764773)
[»] chr3 (2 HSPs)
chr3 (20-529)||(15789351-15789856)
chr3 (165-209)||(34934606-34934650)
[»] chr4 (1 HSPs)
chr4 (44-311)||(20089499-20089762)
[»] chr8 (1 HSPs)
chr8 (44-213)||(7994512-7994681)
[»] chr6 (1 HSPs)
chr6 (385-433)||(10515825-10515873)
[»] chr1 (2 HSPs)
chr1 (376-439)||(11644471-11644534)
chr1 (139-203)||(36077658-36077722)
[»] chr2 (2 HSPs)
chr2 (154-194)||(27071816-27071856)
chr2 (157-209)||(31425906-31425958)


Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 20 - 529
Target Start/End: Original strand, 13783179 - 13783684
Alignment:
Q  20 tgtttcattgtaaggcggctgtcaatgtttggaatgcggctaatgtttggcacctcgtatctccatctttggacctgtttgataatgcatcagatatcat 119  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||    
T  13783179 tgtttcactgtaaggcggctgtcgatgtttggaatgcggctaatgtttggcacctgatatctccatctttggacctgtttgataatgcatcagatattat 13783278  T
Q  120 attccatttgttgcgaatattgtctacaacccagatagagaatattgtcactattatatggagtatctggaaagctagaaaccttaagttgtggtaagta 219  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       
T  13783279 attccatttgttgagaatattgtctacaacccagatagagaatattgtcactattatatggagtatctggaaagctagaaaccttaagttgtggcaa--- 13783375  T
Q  220 acaagtgacagactcacccacgacaatcatggtaagagctatccatcttttagaaggttggagaagtgctaatcgtaagcaaaatccgacaaatcaaagt 319  Q
     ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  13783376 -caagtgacagattcacccacaacaatgatggtaagagctatccatcttttagaaggttggagaagtgctaatcgtaagcaaaatccgtctaatcaaagt 13783474  T
Q  320 aacattgctaccactcttcctcacaatcacaataaccaggtagtagatggagattcaaacatcagatggaggaaacctagaagtggcagattcaagtgta 419  Q
     |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13783475 cacattgataccactcttcctcgcaatcacaataaccaggtagtagatggagattcaaacatcagatggaggaaacctagaagtggcagactcaagtgta 13783574  T
Q  420 atgttgatgcctccttttcagacgtcaacaacaagattggtttgtgcatgtgtattagagattcaacaggattccatgtccgatccaaaatcacatgttt 519  Q
    | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |  |||||    
T  13783575 acgttgatgcctccttttcagacgtcaacaacaagattggtttgggcatgtgtattagagattcaacaggattccatgtccgatccaaaattatgtgttt 13783674  T
Q  520 ctctctgttg 529  Q
    ||||| ||||    
T  13783675 ctctccgttg 13783684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 301
Target Start/End: Complemental strand, 5610010 - 5609979
Alignment:
Q  270 tagaaggttggagaagtgctaatcgtaagcaa 301  Q
    ||||||||||||||||||||||||||||||||    
T  5610010 tagaaggttggagaagtgctaatcgtaagcaa 5609979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 20 - 529
Target Start/End: Complemental strand, 2995 - 2490
Alignment:
Q  20 tgtttcattgtaaggcggctgtcaatgtttggaatgcggctaatgtttggcacctcgtatctccatctttggacctgtttgataatgcatcagatatcat 119  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||| |||||||||| ||    
T  2995 tgtttcattgtaaggcggctgtcgatgtgtggaatgcggctaatgtttggcacctgatatctccatctttggtcctgtttgataatacatcagatattat 2896  T
Q  120 attccatttgttgcgaatattgtctacaacccagatagagaatattgtcactattatatggagtatctggaaagctagaaaccttaagttgtggtaagta 219  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||       
T  2895 attccatttgttgagaatattgtctacaacccagatagagaatattgtcactattatttggagtatctggaaagctagaaaccttaagttgtggcaa--- 2799  T
Q  220 acaagtgacagactcacccacgacaatcatggtaagagctatccatcttttagaaggttggagaagtgctaatcgtaagcaaaatccgacaaatcaaagt 319  Q
     ||||||||||| ||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||    
T  2798 -caagtgacagattcaacgacaacaatcatggtaagagctatccatcttttagaaggttggagaagtgctaatcgtaagcaaaatccgtctaatcatagt 2700  T
Q  320 aacattgctaccactcttcctcacaatcacaataaccaggtagtagatggagattcaaacatcagatggaggaaacctagaagtggcagattcaagtgta 419  Q
     |||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  2699 cacattgataccactcttcctcgcaatcacactaaccaggtagtagatggagattcaaacatccgatggaggaaacctagaagtggcagactcaagtgta 2600  T
Q  420 atgttgatgcctccttttcagacgtcaacaacaagattggtttgtgcatgtgtattagagattcaacaggattccatgtccgatccaaaatcacatgttt 519  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||  |||||    
T  2599 atgttgatgcctctttttcagacgtcaacaacaagattggtttgggcatgtgtattagagattcaacaggatcccatgtccgatcaaaaatcatgtgttt 2500  T
Q  520 ctctctgttg 529  Q
    ||||| ||||    
T  2499 ctctccgttg 2490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 524
Target Start/End: Complemental strand, 13066202 - 13065702
Alignment:
Q  20 tgtttcattgtaaggcggctgtcaatgtttggaatgcggctaatgtttggcacctcgtatctccatctttggacctgtttgataatgcatcagatatcat 119  Q
    ||||||| |||||||| |||||| |||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||| ||    
T  13066202 tgtttcactgtaaggcagctgtcgatgtttggaatgcggctaatgtttggcacctgatatctccatctttggtcctgtttgataatgcatcagatattat 13066103  T
Q  120 attccatttgttgcgaatattgtctacaacccagatagagaatattgtcactattatatggagtatctggaaagctagaaaccttaagttgtggtaagta 219  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||       
T  13066102 attccatttgttgagaatattgtctacaacccaaatagagaatattgtcactattatttggagtatctggaaagctagaaaccttaagttgtggcaa--- 13066006  T
Q  220 acaagtgacagactcacccacgacaatcatggtaagagctatccatcttttagaaggttggagaagtgctaatcgtaagcaaaatccgacaaatcaaagt 319  Q
     ||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||    
T  13066005 -caagtgacagattcaaccacaacaatcatggtaagagctatccatcttttagaaggttggagaagtgctaatcgtaagcaaaatccgtctaatcatagt 13065907  T
Q  320 aacattgctaccactcttcctcacaatcacaataaccaggtagtagatggagattcaaacatcagatggaggaaacctagaagtggcagattcaagtgta 419  Q
     |||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13065906 cacattgataccactcttcctcgcaatcacactaaccaggtagtagatggagattcaaacatcagatggaggaaacctagaagtggcagactcaagtgta 13065807  T
Q  420 atgttgatgcctccttttcagacgtcaacaacaagattggtttgtgcatgtgtattagagattcaacaggattccatgtccgatccaaaatcacatgttt 519  Q
    |  |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||  |||||    
T  13065806 acattgatgcctctttttcagacgtcaacaacaagattggtttgggcatgtgtattagagattcaaaaggattccatgtccgatcaaaaatcatgtgttt 13065707  T
Q  520 ctctc 524  Q
    |||||    
T  13065706 ctctc 13065702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 20 - 529
Target Start/End: Original strand, 8724018 - 8724523
Alignment:
Q  20 tgtttcattgtaaggcggctgtcaatgtttggaatgcggctaatgtttggcacctcgtatctccatctttggacctgtttgataatgcatcagatatcat 119  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||| ||    
T  8724018 tgtttcactgtaaggcggctgtcgatgtttggaatgcggctaatgtttggcatctgatatctccatctttggacctgtttgataatgcatcagatattat 8724117  T
Q  120 attccatttgttgcgaatattgtctacaacccagatagagaatattgtcactattatatggagtatctggaaagctagaaaccttaagttgtggtaagta 219  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||       
T  8724118 attccatttgttgaaaatattgtctacaacccagatagagaatattgtcactactatatggagtatctggaaagctaggaaccttaagttgtggcaa--- 8724214  T
Q  220 acaagtgacagactcacccacgacaatcatggtaagagctatccatcttttagaaggttggagaagtgctaatcgtaagcaaaatccgacaaatcaaagt 319  Q
     ||||||||||| |||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||  | |||||||||    
T  8724215 -caagtgacagattcacccacaacaatcttggtaagagctacccatcttttagaaggttggagaagtgctaatcgtaaacaaaatcctcctaatcaaagt 8724313  T
Q  320 aacattgctaccactcttcctcacaatcacaataaccaggtagtagatggagattcaaacatcagatggaggaaacctagaagtggcagattcaagtgta 419  Q
     |||||| |||||| |||||||  || ||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||| |||||||||    
T  8724314 cacattgataccacccttcctcgtaaccacaatatccaggtagtagatggagtttctaacatcagatggaggaaacctagaagtggtagactcaagtgta 8724413  T
Q  420 atgttgatgcctccttttcagacgtcaacaacaagattggtttgtgcatgtgtattagagattcaacaggattccatgtccgatccaaaatcacatgttt 519  Q
    | |||||||| || |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||  | |||    
T  8724414 acgttgatgcatcattttcagaagtcaacaacaagattggtttgggcatatgtattagagattcaacaggatcccatgtccgatccaaaatcatgttttt 8724513  T
Q  520 ctctctgttg 529  Q
    ||||| ||||    
T  8724514 ctctccgttg 8724523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 42764733 - 42764773
Alignment:
Q  154 atagagaatattgtcactattatatggagtatctggaaagc 194  Q
    |||||||||||||| |||||||| |||||||| ||||||||    
T  42764733 atagagaatattgttactattatgtggagtatatggaaagc 42764773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 20 - 529
Target Start/End: Original strand, 15789351 - 15789856
Alignment:
Q  20 tgtttcattgtaaggcggctgtcaatgtttggaatgcggctaatgtttggcacctcgtatctccatctttggacctgtttgataatgcatcagatatcat 119  Q
    ||||||| |||||||||| |||| |||||||||||||||||||||||||||| ||  | |||||||||||||||||||||||||||||||||||||| ||    
T  15789351 tgtttcactgtaaggcggttgtcgatgtttggaatgcggctaatgtttggcatctgatctctccatctttggacctgtttgataatgcatcagatattat 15789450  T
Q  120 attccatttgttgcgaatattgtctacaacccagatagagaatattgtcactattatatggagtatctggaaagctagaaaccttaagttgtggtaagta 219  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||       
T  15789451 attccatttgttgaaaatattgtctacaacccagatagagaatattgtcactactatatggagtatctggaaagctaggaaccttaagttgtggcaa--- 15789547  T
Q  220 acaagtgacagactcacccacgacaatcatggtaagagctatccatcttttagaaggttggagaagtgctaatcgtaagcaaaatccgacaaatcaaagt 319  Q
     ||||||||||| |||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||    
T  15789548 -caagtgacagattcacccacaacaatcttggtaagagctacccatcttttagaaggttggagaagtgctaatcgtaaacaaaatccgcctaatcaaagt 15789646  T
Q  320 aacattgctaccactcttcctcacaatcacaataaccaggtagtagatggagattcaaacatcagatggaggaaacctagaagtggcagattcaagtgta 419  Q
     |||||| |||||| |||||||  || ||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||| |||||||||    
T  15789647 cacattgataccacccttcctcgtaaccacaatatccaggtagtagatggagtttctaacatcagatggaggaaacctagaagtggtagactcaagtgta 15789746  T
Q  420 atgttgatgcctccttttcagacgtcaacaacaagattggtttgtgcatgtgtattagagattcaacaggattccatgtccgatccaaaatcacatgttt 519  Q
    |||||||||| || |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||  | |||    
T  15789747 atgttgatgcatcattttcagaagtcaacaacaagattggtttgggcatgtgtattagagattcaacaggatcccatgtccgattcaaaatcatgttttt 15789846  T
Q  520 ctctctgttg 529  Q
    ||||| ||||    
T  15789847 ctctccgttg 15789856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 34934606 - 34934650
Alignment:
Q  165 tgtcactattatatggagtatctggaaagctagaaaccttaagtt 209  Q
    ||||||||| || ||||| |||||||||||||||||||| |||||    
T  34934606 tgtcactatcatgtggagcatctggaaagctagaaacctcaagtt 34934650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 44 - 311
Target Start/End: Complemental strand, 20089762 - 20089499
Alignment:
Q  44 atgtttggaatgcggctaatgtttggcacctcgtatctccatctttggacctgtttgataatgcatcagatatcatattccatttgttgcgaatattgtc 143  Q
    |||||||||||||||||||||||| ||||||  | ||||||||| || | | |||||||||||||||| ||||||||||  || |||| | ||  |||||    
T  20089762 atgtttggaatgcggctaatgtttagcacctgatctctccatctctgaatcagtttgataatgcatcatatatcatatttaatctgttacaaaagttgtc 20089663  T
Q  144 tacaacccagatagagaatattgtcactattatatggagtatctggaaagctagaaaccttaagttgtggtaagtaacaagtgacagactcacccacgac 243  Q
    |||  |||| |  |||| |||||| || || || ||||||||||||||||||||||||||||| |||||    | |||| ||| |||| |||  ||  ||    
T  20089662 tactgcccaaactgagactattgttaccataatgtggagtatctggaaagctagaaaccttaatttgtg----gcaacatgtgtcagattcaaacataac 20089567  T
Q  244 aatcatggtaagagctatccatcttttagaaggttggagaagtgctaatcgtaagcaaaatccgacaa 311  Q
    |||| ||| ||||||||   | ||||||||||||||||| | || |||||| ||||||| ||| ||||    
T  20089566 aatcctggaaagagctaagtaccttttagaaggttggaggaatgttaatcgcaagcaaagtcctacaa 20089499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 44 - 213
Target Start/End: Original strand, 7994512 - 7994681
Alignment:
Q  44 atgtttggaatgcggctaatgtttggcacctcgtatctccatctttggacctgtttgataatgcatcagatatcatattccatttgttgcgaatattgtc 143  Q
    |||||||||||  ||| ||||||||||||||  | ||||||||| || | |  |||||||||||| | |||||||||||  || | |||| ||   | ||    
T  7994512 atgtttggaatatggccaatgtttggcacctgatttctccatctctgaatcaatttgataatgcacccgatatcatatttaatcttttgcaaaagctatc 7994611  T
Q  144 tacaacccagatagagaatattgtcactattatatggagtatctggaaagctagaaaccttaagttgtgg 213  Q
    |||||||||||| |||| |||||| || || || ||||||||||||||||||||||||||||| ||||||    
T  7994612 tacaacccagatcgagactattgttaccataatgtggagtatctggaaagctagaaaccttaaattgtgg 7994681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 433
Target Start/End: Original strand, 10515825 - 10515873
Alignment:
Q  385 atggaggaaacctagaagtggcagattcaagtgtaatgttgatgcctcc 433  Q
    |||||||||||| |||||||| |||| ||| ||||||||||||||||||    
T  10515825 atggaggaaaccgagaagtggtagatacaaatgtaatgttgatgcctcc 10515873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 439
Target Start/End: Original strand, 11644471 - 11644534
Alignment:
Q  376 aaacatcagatggaggaaacctagaagtggcagattcaagtgtaatgttgatgcctccttttca 439  Q
    |||| |||||||||||||||| |||||||||||||  || || ||| | |||||||||||||||    
T  11644471 aaacttcagatggaggaaaccgagaagtggcagatataaatgcaatatcgatgcctccttttca 11644534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 36077658 - 36077722
Alignment:
Q  139 ttgtctacaacccagatagagaatattgtcactattatatggagtatctggaaagctagaaacct 203  Q
    ||||||||||| ||||| |||| ||||||||| || || ||||| || |||||||||| ||||||    
T  36077658 ttgtctacaactcagatcgagactattgtcaccataatgtggagcatttggaaagctataaacct 36077722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 27071816 - 27071856
Alignment:
Q  154 atagagaatattgtcactattatatggagtatctggaaagc 194  Q
    |||||||||||||| |||||||| |||||||| ||||||||    
T  27071816 atagagaatattgttactattatgtggagtatatggaaagc 27071856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 31425906 - 31425958
Alignment:
Q  157 gagaatattgtcactattatatggagtatctggaaagctagaaaccttaagtt 209  Q
    ||||||||||||||||| || |||||||| ||||| || || |||||||||||    
T  31425906 gagaatattgtcactataatgtggagtatttggaaggccaggaaccttaagtt 31425958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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