View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17222_low_7 (Length: 527)
Name: NF17222_low_7
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 37133696 - 37133921
Alignment:
| Q |
1 |
cttacctaaacagtgttgatgtccctggagtatttattgtaccaactatgtttgttaaggtatgtatatgcattacaatgctcctttgaatgttgaggtt |
100 |
Q |
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| T |
37133696 |
cttacctaaacagtgttgatgtccctggagtatttattgtaccaactatgtttgttaaggtatgtatatgcattacaatgctcctttgaatgttgaggtt |
37133795 |
T |
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| Q |
101 |
ttgtctctttttactgtgacaaagatagccgtgtgagcccgttaataagatggaaatactgc------atatgacactgatttgttc---tgatagtcta |
191 |
Q |
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| T |
37133796 |
ttgtctctttttactgtgacaaagatagccgtgtgagcccgttaataagatggaaatactgcatattgatatgacactgatttgttctgatgatattcta |
37133895 |
T |
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| Q |
192 |
tgtgatactatgattcatatttctga |
217 |
Q |
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| T |
37133896 |
tgtgatactataattcatatttctga |
37133921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 307 - 464
Target Start/End: Original strand, 37133936 - 37134093
Alignment:
| Q |
307 |
tttccttatgaaatgagaagtagcagcattggtccctgcatgatcaaaatcataatagagctctcgaaagaaagaactccgatatattttacaattctag |
406 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||| |||| |||||||| |
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| T |
37133936 |
tttccttatgaaatgagaagtagtagtattggtccctgcatgatcaaaatcataacagagctctcggaagaaagaactctgatatactttataattctag |
37134035 |
T |
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| Q |
407 |
cctttcagaatatatgcagtgacactaaaaggaagacctttgctttgactacctttct |
464 |
Q |
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| T |
37134036 |
cctttcagaatatatgcagtgacacaaaaaggaagacctttgctttgactacctttct |
37134093 |
T |
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