View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17222_low_8 (Length: 515)
Name: NF17222_low_8
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 17 - 501
Target Start/End: Original strand, 53673044 - 53673528
Alignment:
| Q |
17 |
atgttttgctttgatgaatcaacaggtcttcttccagttacaatctcaagaagaagaacaccaaatgcaaaaatatcagttttctcatccacaataccat |
116 |
Q |
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| T |
53673044 |
atgttttgctttgatgaatcaacaggtcttcttccagttacaatctcaagaagaagaacaccaaatgcaaatatatcagttttctcatccacaataccat |
53673143 |
T |
|
| Q |
117 |
gcataaagacctctggtgctaaatatccaaatgttccctcaactgggattacagcatggtgagtccatttgttaggaagccactttgctagtccaaaatc |
216 |
Q |
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| T |
53673144 |
gcataaagacctctggtgctaaatatccaaatgttccctcaacagggattacagcatggtgagtccatttgttaggaagccactttgctagtccaaaatc |
53673243 |
T |
|
| Q |
217 |
agtaatctaatatatgcaacaaaaagtaataatttaaaactattagttgtgtgaattgaatttggtataaaatcaatcaatgttatcagaacattgcttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
53673244 |
agtaatctaatatatgcaacaaaaagtaataatttaaaactattagttgtgtgaattgaatttggtataaaatcaatcaatgttattagaacattgcttg |
53673343 |
T |
|
| Q |
317 |
ctgttctatagtatctacctgtggttcataatcaggaccaagaagaacattggaggctttaatgtcacgatgaattattctgtgtttgcaacatttatga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53673344 |
ctgttctatagtatctacctgtggttcataatcaggaccaagaagaacattggaggctttaatgtcacgatgaattattctgtgtttgcaacatttatga |
53673443 |
T |
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| Q |
417 |
agataatggagtccccttgcaactccaatagctattttgtatcttattggccagtcaagtgaatttcctgctttacctgatatat |
501 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53673444 |
agataatggagtccccttgcaactccaatagctattttgtatcttattggccagtcaagtgaatttcctgctttacctgatatat |
53673528 |
T |
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