View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17223_low_1 (Length: 653)
Name: NF17223_low_1
Description: NF17223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17223_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 547; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 55 - 638
Target Start/End: Original strand, 1110926 - 1111509
Alignment:
| Q |
55 |
gcattgaaaaatacaagttggagtcttctaagggtaaaacaatgatctctctaagcaacagtcagtggaaagatcaagtgaaacaatcacatgttgctca |
154 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1110926 |
gcattgaaaaatacaagttggagtctgttaagggtaaaacaatgatctctctaagcaacagtcagtggaaagatcaagtgaaacaatcacatgttgctca |
1111025 |
T |
|
| Q |
155 |
acggtaactctattagaattccaagatagattatcctctaaacaaatgtaattatcccgcatgctgagaactttcaccatgcttcttgcaacacgacgct |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1111026 |
acggtaactctattagaattccaagatagattatcctctaaacaaatgtaattatcccgcatgctgagaactttcaccatgcttcttgcaacacgacgct |
1111125 |
T |
|
| Q |
255 |
ccttatcatacttactaccgaacgctaccaccttataagttccggtggaattatcataaccaaaagagtaacgaaaataaccattcaaatggggtgnnnn |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1111126 |
ccttatcatacttactaccgaacgctaccaccttataagttccggtggaattatcataaccaaaagagtaacgaaaataaccattcaaatggggtgaaaa |
1111225 |
T |
|
| Q |
355 |
nnntacagatgattttgtcctagtggctggtttccagagaacccaatgctgaatatcataattagtcaaacatagtaaggatcatattgaatggtcaaca |
454 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1111226 |
aaatacagatgattttgtcctagtggctgttttccagagaacccaatgctgaatatcataattagtcaaacatagtaaggatcatattgaatggtcaaca |
1111325 |
T |
|
| Q |
455 |
aattctcaagtaaacaataaattgggaaggttacaacataccaatcaatatccttcttagaaggtctcgacggtagtgctagctgtgggtttcgtttcaa |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1111326 |
aattctcaagtaaacaataaattgggaaggttacaacataccaatcaatatccttcttagaaggtctcgacggtagtgctagctgtgggtctcgtttcaa |
1111425 |
T |
|
| Q |
555 |
ctatcgtttttgggtgcagttttttacaagggtggttacatggttttaatttgtagggttttgattgttttctttgctcctatg |
638 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1111426 |
ctatcgtttttgggtgcagttttttacaagggtggttacatggttttaatttgtagggttttgattgttttctttgctcctatg |
1111509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 10460244 - 10460202
Alignment:
| Q |
278 |
gctaccaccttataagttccggtggaattatcataaccaaaag |
320 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||||||||||| |
|
|
| T |
10460244 |
gctaccaccttataagtttcagtcgaattatcataaccaaaag |
10460202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 10571460 - 10571505
Alignment:
| Q |
116 |
tcagtggaaagatcaagtgaaacaatcacatgttgctcaacggtaa |
161 |
Q |
| |
|
||||| || |||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
10571460 |
tcagttgagagatcaagtgaaacaatcacatattgctcaacagtaa |
10571505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 25376741 - 25376695
Alignment:
| Q |
278 |
gctaccaccttataagttccggtggaattatcataaccaaaagagta |
324 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
25376741 |
gctaccaccttataagttccagtggaattatcatggccaaaagagta |
25376695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 495
Target Start/End: Original strand, 16470756 - 16470829
Alignment:
| Q |
425 |
catagtaaggatcatattgaa---tggtcaacaaattctcaagtaaacaataaattgggaaggttacaacatac |
495 |
Q |
| |
|
||||||||||||||||||||| |||||||| | |||||||||||| | |||||| ||||||||||| |||| |
|
|
| T |
16470756 |
catagtaaggatcatattgaatggtggtcaacgagttctcaagtaaaagagaaattgagaaggttacaatatac |
16470829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 25901463 - 25901508
Alignment:
| Q |
116 |
tcagtggaaagatcaagtgaaacaatcacatgttgctcaacggtaa |
161 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| ||||||||| |||| |
|
|
| T |
25901463 |
tcagtggacagatcaagcgaaacaatcacatattgctcaacagtaa |
25901508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 25915481 - 25915526
Alignment:
| Q |
116 |
tcagtggaaagatcaagtgaaacaatcacatgttgctcaacggtaa |
161 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| ||||||||| |||| |
|
|
| T |
25915481 |
tcagtggacagatcaagcgaaacaatcacatattgctcaacagtaa |
25915526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University