View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17223_low_2 (Length: 621)
Name: NF17223_low_2
Description: NF17223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17223_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 358
Target Start/End: Original strand, 7418459 - 7418801
Alignment:
| Q |
19 |
gagtgaaactgttgttgctgctgctgattttgttgctgcaacgacgtgagttgttgctgccgttcgcggcgtttagcagctggaacccaagtacttttca |
118 |
Q |
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| T |
7418459 |
gagtgaaactgttgttgctgctgctgattttgttgctgcaacgacgtgagttgttgctgccgttcgcggcgtttagcagctggaacccaagtacttttca |
7418558 |
T |
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| Q |
119 |
catgagtttgacactgaaaccctcgactcttgcaacaagttctacatctaagatgtggacaatctttcttagcttggttaccacaatcttgacagttcat |
218 |
Q |
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| T |
7418559 |
catgagtttgacactgaaaccctcgactcttgcaacaagttctacatctaagatgtggacaatctttcttagcttggttaccacaatcttgacagttcat |
7418658 |
T |
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| Q |
219 |
tccaccaccacctaaaccaccacttgaagacctcataactgttaaaccaaatcttgttgattcatcagaaaatgaaacagaaacgttgtc---gttgttg |
315 |
Q |
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| T |
7418659 |
tccaccaccacctaaaccaccacttgaagacctcataactgttaaaccaaatcttgttgattcatcagaaaatgaaacagaaacgttgtcgttgttgttg |
7418758 |
T |
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| Q |
316 |
ttgttgtcatcgtttcttctcgaacttccaacaccaaaagagt |
358 |
Q |
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| T |
7418759 |
ttgttgtcgtcgtttcttctcgaacttccaacaccaaaagagt |
7418801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 427 - 601
Target Start/End: Original strand, 7418870 - 7419044
Alignment:
| Q |
427 |
ggccatatctcaaaacctttgttgtagatctcttcgtttctgaacaaaaactgattattattatttccactgttgttgttattttcttcttgttctcttg |
526 |
Q |
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| T |
7418870 |
ggccatatctcaaaacctttgttgtagatctcttcgtttctgaacacaaactgattattattatttccactgttgttgttattttcttcttgttctcttg |
7418969 |
T |
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| Q |
527 |
cttcttctttgcctcttccactgcttagagagaagaaaccagccatgttgttttgtaacacaaaaatgaaacgat |
601 |
Q |
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| T |
7418970 |
cttcttctttgcctcttccactgcttagagagaagaaaccagccatgttgttttgtaacacaaaaatgaaacgat |
7419044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 70 - 226
Target Start/End: Original strand, 52767556 - 52767712
Alignment:
| Q |
70 |
tgttgctgccgttcgcggcgtttagcagctggaacccaagtacttttcacatgagtttgacactgaaaccctcgactcttgcaacaagttctacatctaa |
169 |
Q |
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| T |
52767556 |
tgttgttgtcgttcacggcgtttagcagcgggaacccaagtactcttaacatgtgtttgacactgaaaccctcgacttttacaacaagttctgcatctta |
52767655 |
T |
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| Q |
170 |
gatgtggacaatctttcttagcttggttaccacaatcttgacagttcattccaccac |
226 |
Q |
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| T |
52767656 |
gatgtatacaatctttctttgcttggttaccacagtcctgacaattcattcctccac |
52767712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 70 - 212
Target Start/End: Complemental strand, 32483108 - 32482966
Alignment:
| Q |
70 |
tgttgctgccgttcgcggcgtttagcagctggaacccaagtacttttcacatgagtttgacactgaaaccctcgactcttgcaacaagttctacatctaa |
169 |
Q |
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||||| || ||||| |||||| ||| ||| ||||||||||| ||||| |||||||||||||||||||| || |||||||| ||||||||||||||||| | |
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| T |
32483108 |
tgttgttgacgttcacggcgtctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaaaccacgactcttacaacaagttctacatctca |
32483009 |
T |
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| Q |
170 |
gatgtggacaatctttcttagcttggttaccacaatcttgaca |
212 |
Q |
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| T |
32483008 |
tgtgaggacaatctttcttagcttggttaccacaatcttgaca |
32482966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 8102002 - 8101882
Alignment:
| Q |
92 |
tagcagctggaacccaagtacttttcacatgagtttgacactgaaaccctcgactcttgcaacaagttctacatctaagatgtggacaatctttcttagc |
191 |
Q |
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||||||| |||||||||||||| || |||||||||||||| | ||| |||| |||||| ||||||||||||||||| | ||| ||||||||||||||||| |
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| T |
8102002 |
tagcagcaggaacccaagtactcttaacatgagtttgacaatcaaaacctctactcttacaacaagttctacatctcatatgaggacaatctttcttagc |
8101903 |
T |
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| Q |
192 |
ttggttaccacaatcttgaca |
212 |
Q |
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| T |
8101902 |
ttgattcccacaatcttgaca |
8101882 |
T |
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