View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17223_low_3 (Length: 450)
Name: NF17223_low_3
Description: NF17223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17223_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 435
Target Start/End: Complemental strand, 37218614 - 37218179
Alignment:
| Q |
18 |
caacattttgatcatgactgcaaataatttgatgaccactgcaaatattagagataaattgtagatccgtatatataacataatatagaatggaatgaga |
117 |
Q |
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| T |
37218614 |
caacattttgatcatgactgcaaataatttgatgaccactgcaaatattagagataaattgtagatccgtatatataacataatatagaatggaatgaga |
37218515 |
T |
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| Q |
118 |
tggaatatattttgaactcttactccttt-gtggtgtccattcttttctttgaagtttagcactctggaaagttatcaatgcaaaaccattaactgtatg |
216 |
Q |
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| T |
37218514 |
tggaatatattttgaactcttactccttttgtggtgtccattcttttctttgaagtttagcactccggaaagttatcaatgcaaaaccattaactgtatg |
37218415 |
T |
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| Q |
217 |
aagggtgtttatgaaatgaaaaataagcttaattggtataggatttttggaggtctctgcagtgttgaccttcnnnnnnnacagaata------------ |
304 |
Q |
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| T |
37218414 |
aagggtgtttatgaaatgaaaaataagcttaattggtataggatttttggaggtctctgcagtgttgaccttctttttttacagaatatgaccttctttt |
37218315 |
T |
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| Q |
305 |
---tatagtgttgacctttttaagtatgtggagta--nnnnnnngcaagttgttgtggagcaatctggagtatatagtgttaccgtgcaagccaagtata |
399 |
Q |
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| T |
37218314 |
ttctgcagtgttgacctttttaagtatgtggagtatttttttttgcaagttgttctggagcaatctggagtatatattgttaccgtgcaagccaagtata |
37218215 |
T |
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| Q |
400 |
tgtggggtaataaatataacgaagagatgtttatct |
435 |
Q |
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| T |
37218214 |
tgtggggtaataaatataacgaagagatgtttatct |
37218179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 5409520 - 5409411
Alignment:
| Q |
121 |
aatatattttgaactcttactcctttgtggtgtccattcttttctttgaagtttagcactctggaaagttatcaatgcaaaaccattaactgtatgaagg |
220 |
Q |
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| T |
5409520 |
aatatattttaaacacttactcctttgtggtgtccattcttttctttgaagtttagcactccagaaagttatcaatgcaaaatcaataattgtatgaagg |
5409421 |
T |
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| Q |
221 |
gtgtttatga |
230 |
Q |
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| T |
5409420 |
gtatttatga |
5409411 |
T |
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