View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17223_low_4 (Length: 359)

Name: NF17223_low_4
Description: NF17223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17223_low_4
NF17223_low_4
[»] chr4 (11 HSPs)
chr4 (14-238)||(3770617-3770841)
chr4 (14-342)||(3755314-3755654)
chr4 (71-329)||(3766911-3767169)
chr4 (234-342)||(3771304-3771412)
chr4 (71-340)||(3751516-3751785)
chr4 (157-340)||(3745785-3745968)
chr4 (71-326)||(3762495-3762750)
chr4 (71-339)||(3780889-3781157)
chr4 (71-339)||(3776576-3776844)
chr4 (29-69)||(3780835-3780875)
chr4 (71-179)||(3844990-3845098)
[»] scaffold0433 (1 HSPs)
scaffold0433 (71-179)||(10050-10158)
[»] chr7 (1 HSPs)
chr7 (234-338)||(25985357-25985461)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 3770617 - 3770841
Alignment:
Q  14 attatactcgacaacagcatccccagatttgacatcaaaccaatgagtattagcttcagcaaatctgaaaagtccaataccaccaatcacaggcatctct 113  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3770617 attatactcgacaacagcatccccagatttgatatcaaaccaatgagtattagcttcagcaaatctgaaaagtccaataccaccaatcataggcatctct 3770716  T
Q  114 caaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatactttccttcagtaaaaacaaaattcatagccattagcaaatcaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3770717 caaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatactttccttcagtaaaaacaaaattcatagccattagcaaatcaa 3770816  T
Q  214 cttcatctttgcatgcagatgcatc 238  Q
    |||||||||||||||||||||||||    
T  3770817 cttcatctttgcatgcagatgcatc 3770841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 342
Target Start/End: Original strand, 3755314 - 3755654
Alignment:
Q  14 attatactcgacaacagcatccccagatttgacatcaaaccaatgagtattagcttcagca------------aatctgaaaagtccaataccaccaatc 101  Q
    ||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||            |||||||||| |||| |||||||||||    
T  3755314 attatactcaacaatagcatccccagatttgatatcaaaccaatgagtattagcttcagcataacctctagcaaatctgaaaaatccactaccaccaatc 3755413  T
Q  102 acaggcatctctcaaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatactttccttcagtaaaaacaaaattcatagcca 201  Q
    ||||||||||||| |||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  3755414 acaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttcagtaaaagcaaaattcatagcca 3755513  T
Q  202 ttagcaaatcaacttcatctttgcatgcagatgcatcgaacccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtc 301  Q
    | |||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| ||||||| |||  | ||||||||||||||||||||||||    
T  3755514 taagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgtc 3755613  T
Q  302 gatcatgcggactgaaccaaaagcagtggttgtgtttagtt 342  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  3755614 gatcatgcggactgaaccaaaggcagtggttgagtttagtt 3755654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 71 - 329
Target Start/End: Original strand, 3766911 - 3767169
Alignment:
Q  71 agcaaatctgaaaagtccaataccaccaatcacaggcatctctcaaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatac 170  Q
    |||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||    
T  3766911 agcaaatctgaaaactccactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatac 3767010  T
Q  171 tttccttcagtaaaaacaaaattcatagccattagcaaatcaacttcatctttgcatgcagatgcatcgaacccttgagattttccaacaagcttagaac 270  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| |||||||     
T  3767011 tttccttcagtaaaagcaaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaatcttagaat 3767110  T
Q  271 tcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagtg 329  Q
    |||  | ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3767111 tcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaggcagtg 3767169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 234 - 342
Target Start/End: Original strand, 3771304 - 3771412
Alignment:
Q  234 gcatcgaacccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagtggttg 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3771304 gcatcgaacccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagtggttg 3771403  T
Q  334 tgtttagtt 342  Q
    |||||||||    
T  3771404 tgtttagtt 3771412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 71 - 340
Target Start/End: Original strand, 3751516 - 3751785
Alignment:
Q  71 agcaaatctgaaaagtccaataccaccaatcacaggcatctctcaaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatac 170  Q
    ||||||||||||||||||| |||||||||| | ||||||||||| | | |||| || | ||  |||||| ||||| ||||||| | |||| |||||||||    
T  3751516 agcaaatctgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatac 3751615  T
Q  171 tttccttcagtaaaaacaaaattcatagccattagcaaatcaacttcatctttgcatgcagatgcatcgaacccttgagattttccaacaagcttagaac 270  Q
    ||||||||| | ||| |||| ||||||||||| || ||| |||  |||||||   |||||||||||| ||| ||||||| ||||||||||||||||||||    
T  3751616 tttccttcaatgaaagcaaagttcatagccatgagaaaaccaaaatcatcttgtgatgcagatgcatagaaaccttgagcttttccaacaagcttagaac 3751715  T
Q  271 tcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagtggttgtgtttag 340  Q
    ||| || |||||||| ||| |||||||  || | ||||  |||||||||||||  |||||||||||||||    
T  3751716 tcaattgtggtcctatagtcaaagggtcatcaaacatgttgactgaaccaaaataagtggttgtgtttag 3751785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 157 - 340
Target Start/End: Original strand, 3745785 - 3745968
Alignment:
Q  157 tacttccattatactttccttcagtaaaaacaaaattcatagccattagcaaatcaacttcatctttgcatgcagatgcatcgaacccttgagattttcc 256  Q
    |||| |||||||||||||||||| | ||| ||||| |||||||||| | ||||  ||  ||||| ||  ||||||||||||  |||||||||| ||||||    
T  3745785 tactcccattatactttccttcaatgaaagcaaaagtcatagccatgaacaaactaaactcatcctttgatgcagatgcatacaacccttgagcttttcc 3745884  T
Q  257 aacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagtggttgtgtttag 340  Q
    ||||||||||||||||| || |||||||||||||||||||||||| || |||  |||| ||||||||| ||| |||||||||||    
T  3745885 aacaagcttagaactcatttttggtcctaaagttaaagggttgtcaataatgttgactaaaccaaaagaagtagttgtgtttag 3745968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 71 - 326
Target Start/End: Original strand, 3762495 - 3762750
Alignment:
Q  71 agcaaatctgaaaagtccaataccaccaatcacaggcatctctcaaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatac 170  Q
    ||||||||||||||||||| | |||||||  ||||||||||| | ||| |||| || | |   |||||| ||||| |||||||   |||| |||||||||    
T  3762495 agcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatac 3762594  T
Q  171 tttccttcagtaaaaacaaaattcatagccattagcaaatcaacttcatctttgcatgcagatgcatcgaacccttgagattttccaacaagcttagaac 270  Q
    ||||||||| | ||| |||||||||  | ||| || ||| | | ||| || |   |||||||||||| ||| ||||||| | |||||||||| |||||||    
T  3762595 tttccttcaatgaaagcaaaattcactgtcataagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagctcttccaacaagtttagaac 3762694  T
Q  271 tcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagca 326  Q
    ||||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||    
T  3762695 tcagttcgggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagca 3762750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 71 - 339
Target Start/End: Original strand, 3780889 - 3781157
Alignment:
Q  71 agcaaatctgaaaagtccaataccaccaatcacaggcatctctcaaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatac 170  Q
    ||||||||||||||||||| |||||||||  ||||||||||| | |||   || ||   ||  |||||| || |  ||||||||  |||| |||||||||    
T  3780889 agcaaatctgaaaagtccactaccaccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatac 3780988  T
Q  171 tttccttcagtaaaaacaaaattcatagccattagcaaatcaacttcatctttgcatgcagatgcatcgaacccttgagattttccaacaagcttagaac 270  Q
    ||||||||| | ||| |||||||||| | ||| || ||| | | ||| ||||   | |||||||||| ||| ||||||| | ||||||||||||||||||    
T  3780989 tttccttcaatgaaagcaaaattcattgtcataagaaaacctagttcttcttgtgaagcagatgcatagaatccttgagctcttccaacaagcttagaac 3781088  T
Q  271 tcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagtggttgtgttta 339  Q
    ||||||||||||||||||||||||||||||| ||||||   ||  |||||||||| ||||||| |||||    
T  3781089 tcagttctggtcctaaagttaaagggttgtcaatcatgttaaccaaaccaaaagcggtggttgagttta 3781157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 71 - 339
Target Start/End: Original strand, 3776576 - 3776844
Alignment:
Q  71 agcaaatctgaaaagtccaataccaccaatcacaggcatctctcaaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatac 170  Q
    ||||||||||||||||||| |||||||||  |||||||| || | ||| |||| |  | ||  |||||| ||||| |||||||   |||| |||||||||    
T  3776576 agcaaatctgaaaagtccactaccaccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatac 3776675  T
Q  171 tttccttcagtaaaaacaaaattcatagccattagcaaatcaacttcatctttgcatgcagatgcatcgaacccttgagattttccaacaagcttagaac 270  Q
    ||||||||| | ||| |||||||||| | ||| || ||| | | ||| || |   | |||||||||| ||| ||||||| | | |||||||| |||||||    
T  3776676 tttccttcaatgaaagcaaaattcattgtcataagaaaacctatttcttcctgtgaagcagatgcatagaatccttgagctctaccaacaagtttagaac 3776775  T
Q  271 tcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagtggttgtgttta 339  Q
    ||| ||| ||||||||||||||||||||||| |||||||  ||| ||||||||  |||||||| |||||    
T  3776776 tcaattcgggtcctaaagttaaagggttgtcaatcatgctaactaaaccaaaaaaagtggttgagttta 3776844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 3780835 - 3780875
Alignment:
Q  29 agcatccccagatttgacatcaaaccaatgagtattagctt 69  Q
    ||||||||||| ||||| ||||| |||||||||||||||||    
T  3780835 agcatccccagttttgaaatcaatccaatgagtattagctt 3780875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 3844990 - 3845098
Alignment:
Q  71 agcaaatctgaaaagtccaataccaccaatcacaggcatctctcaaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatac 170  Q
    ||||||||| ||||| ||| | ||||||||||||||||| |||| ||| || | | |  || |||| |||||||| ||||||| | | |||||||||||     
T  3844990 agcaaatctaaaaagcccacttccaccaatcacaggcatttctctaaccttttcatatgcatcatttcttcccaagatagtaattgtgcttccattatat 3845089  T
Q  171 tttccttca 179  Q
    || ||||||    
T  3845090 ttcccttca 3845098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 179
Target Start/End: Complemental strand, 10158 - 10050
Alignment:
Q  71 agcaaatctgaaaagtccaataccaccaatcacaggcatctctcaaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatac 170  Q
    ||||||||| ||||| ||| | ||||||||||||||||| |||| ||| || | | |  || |||| |||||||| ||||||| | | |||||||||||     
T  10158 agcaaatctaaaaagcccacttccaccaatcacaggcatttctctaaccttttcatatgcatcatttcttcccaagatagtaattgtgcttccattatat 10059  T
Q  171 tttccttca 179  Q
    || ||||||    
T  10058 ttcccttca 10050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 338
Target Start/End: Complemental strand, 25985461 - 25985357
Alignment:
Q  234 gcatcgaacccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagtggttg 333  Q
    |||| ||| ||||| | ||||||||| |  || ||||||| ||  |||||||| ||||||||||| || ||||||   ||| ||||||||||||||||||    
T  25985461 gcatagaatccttgtgcttttccaaccaatttggaactcaattgaggtcctaaggttaaagggttctcaatcatgttaactaaaccaaaagcagtggttg 25985362  T
Q  334 tgttt 338  Q
     ||||    
T  25985361 agttt 25985357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University