View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17223_low_5 (Length: 293)
Name: NF17223_low_5
Description: NF17223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17223_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 51473820 - 51473939
Alignment:
| Q |
26 |
tgcttttcaccatcatctctatctaataacttatcatttgttctattaatttaaattagatctaactaatgacaataataaaattaacatcataattgta |
125 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
51473820 |
tgcttttcatcatcatctctatctaataacttatcatttgttctattaatttaaattagatctagctaatgactataataaaattaacatcataattgta |
51473919 |
T |
|
| Q |
126 |
tccattaatttaggtttact |
145 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
51473920 |
tccattaatttaggtttact |
51473939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 51474009 - 51474074
Alignment:
| Q |
214 |
tattcctctttggattcttactccttttttctcaaacctccaaccttccattattccaaatccatc |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51474009 |
tattcctctttggattcttactccttttttctcaaacctccaaccttccattattccaaatccatc |
51474074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 16673579 - 16673512
Alignment:
| Q |
26 |
tgcttttcaccatcatctctatctaataacttatcatttgttctattaatttaaattagatctaacta |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||| |||||| |
|
|
| T |
16673579 |
tgcttttcaccatcatctctatctaataacatattatttgttttattaatttaaattagatgtaacta |
16673512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 110
Target Start/End: Complemental strand, 18297320 - 18297289
Alignment:
| Q |
79 |
aattagatctaactaatgacaataataaaatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
18297320 |
aattagatctaactaatgacaataataaaatt |
18297289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 110
Target Start/End: Original strand, 44219784 - 44219815
Alignment:
| Q |
79 |
aattagatctaactaatgacaataataaaatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
44219784 |
aattagatctaactaatgacaataataaaatt |
44219815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University