View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17224_low_1 (Length: 373)
Name: NF17224_low_1
Description: NF17224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17224_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 30575758 - 30576106
Alignment:
| Q |
18 |
aaacaaaagaataagaaatcaaaaggaagaaatatcagttgacacttgacagtgccggaaagaacgaaatgggaaaaatagcaaaaactgtggagaaata |
117 |
Q |
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| T |
30575758 |
aaacaaaagaataagaaatcaaaaggaagaaatatcagttgacacttgacagtgccggaaagaacgaaatgggaaaaatagcaaaaactg--gagaaata |
30575855 |
T |
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| Q |
118 |
gtgacattcacacctatccacaaatctctaacagtgt---aatgtaatacaaatactacaatagaattagtaaggccggaacagtgagcaatcgagtgaa |
214 |
Q |
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| T |
30575856 |
gtgacattcacacctatccacaaatctctaacagtgtttgaatgtaatacaaatactacaatagaattagtaaggccggaacagtgagcaatcgagtgaa |
30575955 |
T |
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| Q |
215 |
aaatatacctgaaattcatataaatgttgagcaaaaacaactaccaattccaagagcagaaagttcaaccacattgtacatttttgatagagtcatatga |
314 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
30575956 |
aaatatacctgaaattcataaaaatgttgagcaaaaacaactaccaattccaagagcagaaagttcaaccgcattgtacatttttgatagagccatatga |
30576055 |
T |
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| Q |
315 |
aaggaaaaactttcccaaccacgacatacagatctggtccgaatctgtgct |
365 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30576056 |
aaggaaaaactttcccaactgcgacatacagatctggtccgaatctgtgct |
30576106 |
T |
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