View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17225_high_1 (Length: 698)
Name: NF17225_high_1
Description: NF17225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17225_high_1 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 640; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 24 - 698
Target Start/End: Complemental strand, 45976055 - 45975378
Alignment:
| Q |
24 |
cttgtgaaaattcctcaacctcttactaaccaacttccactgtttgtggagatctcctcgctccaccgggaatataccccttcaataatatacacactca |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45976055 |
cttgtgaaaattcctcaacctcttactaaccaacttccactgtttgtggagatctcctcgctccaccgggaatataccccttcaataatatacacactca |
45975956 |
T |
|
| Q |
124 |
gaatagcaacaacataataaggaaaaaagtga---ttatattgaagaatactactatatataccccatatttatggcaacaagttttcccagttgttcaa |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45975955 |
gaatagcaacaacataataaggaaaaaagtgaagattatattgaagaatactactatatataccccatatttatggcaacaagttttcccagttgttcaa |
45975856 |
T |
|
| Q |
221 |
caaacaccaaggtgttctccgaagaacgatacaactcctgagctttatcatgaagtagcttcaagcgagaatcttcttgcctatcgacaagcaccacctc |
320 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45975855 |
caaacaccaaggtgttctctgaagaacgatacaactcctgagctttatcatgaagtagcttcaagcgagaatcttcttgcctatcgacaagcaccacctc |
45975756 |
T |
|
| Q |
321 |
catagatgcctcgcttggttcaacggctttaagtgccatcaaagtgggtatcttcttaccttcttcctcgtcattgcacatcacccacagatacggattc |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45975755 |
catagatgcctcgcttggttcaacggctttaagtgccatcaaagtgggtatcttcttaccttcttcctcgtcattgcacatcacccacagatacggattc |
45975656 |
T |
|
| Q |
421 |
atccccagtatgttgtaaaatccatcacttatcttatccgtatacgacaagcacccactcacctgataaccaaaaatggcatatttaatcacacaaatat |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45975655 |
atccccagtatgttgtaaaatccatcacttatcttatccgtatatgacaagcacccactcacctgataaccaaaaatggcatatttaatcacacaaatat |
45975556 |
T |
|
| Q |
521 |
tattgaacgctagttgcaatatggttttaagttgttatctgaagctgcttcaactgcaatataaaagattttgagatctctgcaaccacatggcatttgt |
620 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45975555 |
taatgaacgctagttgcaatatggttttaagttgttatctgcagctgcttcaactgcaatataaaagattttgagatctctgcaaccacatggcatttgt |
45975456 |
T |
|
| Q |
621 |
aaatttgattgcatcatcaaagttttgccgcaacataaagttcaatagttttaaaatgcagcgaaataatgcagtcaa |
698 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45975455 |
aaatttgattgcatcaacaatgttttgccgcaacataaagttcaatagttttaaaatgcagcgaaataatgcagtcaa |
45975378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 28052383 - 28052450
Alignment:
| Q |
28 |
tgaaaattcctcaacctcttactaaccaacttccactgtttgtggagatctcctcgctccaccgggaa |
95 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||| ||| || ||||||||| ||||||| ||||| |
|
|
| T |
28052383 |
tgaaaattcctcaaccgcttactaaccatcttccaccttttttgcagatctccttgctccacagggaa |
28052450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 28052879 - 28052935
Alignment:
| Q |
390 |
gtcattgcacatcacccacagatacggattcatccccagtatgttgtaaaatccatc |
446 |
Q |
| |
|
|||||| ||||| ||||||| |||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
28052879 |
gtcattacacataacccacaaatacggattcattcccaatatgttataaaatccatc |
28052935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 277
Target Start/End: Original strand, 28052682 - 28052763
Alignment:
| Q |
196 |
gcaacaagttttcccagttgttcaacaaacaccaaggtgttctccgaagaacgatacaactcctgagctttatcatgaagta |
277 |
Q |
| |
|
|||||||||||||| || | |||||| | |||||||| ||||| |||| | ||||||||| ||||||||||| ||||||| |
|
|
| T |
28052682 |
gcaacaagttttccaagcttttcaacgagcaccaaggcattctcagaagcagaatacaactcttgagctttatcttgaagta |
28052763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University