View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17225_high_5 (Length: 440)
Name: NF17225_high_5
Description: NF17225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17225_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 424
Target Start/End: Original strand, 13287511 - 13287922
Alignment:
| Q |
11 |
cataggtagtaagtaataggaacttgacctttttcatgcgaactccttggaggctaagctccagttgactctctaggtcttgtaggtttctgatactcaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13287511 |
cataggtagtaagtaataggaacttgacctttttcatgcgaactccttgtaggctaagttccagctgactctctaggtcttgtaggtttctgatactcaa |
13287610 |
T |
|
| Q |
111 |
accataaagctgttctcccatcaactgcctatgagctcaaaatgttagtgttctcatacatggagcttaatgaatagaaatattg--aaaaaatgctgaa |
208 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13287611 |
accataaagctgttctcccatcaattgcctatgagctcaaaatgttagtgctctcatacaaggagcttaatgaatagaaatattgaaaaaaaatgctgaa |
13287710 |
T |
|
| Q |
209 |
tgaattagttgaaggttgtacctatggttttcctgtagactttgtagttgttgccttaaaatctcagcctccctttgccaaaactatcagttagttatca |
308 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||| | |||||||| |
|
|
| T |
13287711 |
tgaattagttgaaggttttacctatggttttcttgtagactttgtagttgctgccttaaaatgtctgcctccctttgccaaaacta----tgagttatca |
13287806 |
T |
|
| Q |
309 |
agtaaaataatgtcaatggttaatgaaaaggaaacaaaatgtgattggctgatattcaactggacctactatcagatatgaaatgtgaatcacagtaatt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13287807 |
agtaaaataatgtcaatggttaatgaaacggaaagaaaatgtgattggctgatattcaactgaacctactatcagatatgaaatgtgaatcacagtaatt |
13287906 |
T |
|
| Q |
409 |
ttatgatgacaattat |
424 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13287907 |
ttatgatgacaattat |
13287922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University