View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17225_high_8 (Length: 309)

Name: NF17225_high_8
Description: NF17225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17225_high_8
NF17225_high_8
[»] chr4 (2 HSPs)
chr4 (1-292)||(40774981-40775270)
chr4 (33-292)||(40768349-40768606)
[»] chr5 (1 HSPs)
chr5 (115-243)||(4679898-4680026)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 40775270 - 40774981
Alignment:
Q  1 gtgggtgaggacacacaagaaggggnnnnnnngagatctccagcatggtaagtactagcatgtgaatatgttttgttattgcgtgaattagacactataa 100  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||| | |||||||||||  ||||||||||||| |||||||||||||||||    
T  40775270 gtgggtgaggacacacaagaaggggaaaaaaagagatctccagcatggtaagtgcaagcatgtgaat--gttttgttattgcatgaattagacactataa 40775173  T
Q  101 ttatttgtaagattatgcaggtgtgatcgcatattgtggcttggaaaaggaataaagcaacttaagtatcaaagtgcagaaaatcagctttcagatcatc 200  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40775172 ttatgcgtaagattatgcaggtgtgatcgcatattgtggcttggaaaaggaataaagcaacttaagtatcaaagtgcagaaaatcagctttcagatcatc 40775073  T
Q  201 gaccagttagttcaatcttcttggttgatgttgaagtaattgaccaccggaagttacaacgagctataaatttcgcaagtgcggttgtacat 292  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40775072 gaccagttagttcaatcttcttggttaatgttgaagtaattgaccaccggaagttacaacgagctataaatttcgcaagtgcagttgtacat 40774981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 33 - 292
Target Start/End: Complemental strand, 40768606 - 40768349
Alignment:
Q  33 gagatctccagcatggtaagtactagcatgtgaatatgttttgttattgcgtgaattagacactataattatttgtaagattatgcaggtgtgatcgcat 132  Q
    |||| |||||||||||||||| | ||||||||||| |  |||||| |||| |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  40768606 gagagctccagcatggtaagtgcaagcatgtgaattt--tttgttgttgcatgaattagacactataattatgcgtaagattatgcaggtgtgatcgcat 40768509  T
Q  133 attgtggcttggaaaaggaataaagcaacttaagtatcaaagtgcagaaaatcagctttcagatcatcgaccagttagttcaatcttcttggttgatgtt 232  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40768508 attgtggcttggaaaaggaataaagcaactaaagtatcagagtgcagaaaatcagctttcagatcatcgaccagttagttcaatcttcttggttgatgtt 40768409  T
Q  233 gaagtaattgaccaccggaagttacaacgagctataaatttcgcaagtgcggttgtacat 292  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||    
T  40768408 gaagtaattgaccaccggaagttagaacgagctatatatttcgcaagtgcagttgtacat 40768349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 115 - 243
Target Start/End: Original strand, 4679898 - 4680026
Alignment:
Q  115 atgcaggtgtgatcgcatattgtggcttggaaaaggaataaagcaacttaagtatcaaagtgcagaaaatcagctttcagatcatcgaccagttagttca 214  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||| || ||| || ||||||||| | |||| ||||||||| ||||||||||||||    
T  4679898 atgcaggtgtgatcgaatattgtggctaggaaaaggaataaagcaactaaattatgaacgtgcagaaattaagctctcagatcatagaccagttagttca 4679997  T
Q  215 atcttcttggttgatgttgaagtaattga 243  Q
    || ||||||||||| ||||||||| ||||    
T  4679998 attttcttggttgaagttgaagtatttga 4680026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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