View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17225_low_11 (Length: 248)
Name: NF17225_low_11
Description: NF17225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17225_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 44296016 - 44295798
Alignment:
| Q |
19 |
gtgttcttaagattattcaaattaaatatcatatcattgaaaggaagttggcaaggtgccccaccatgtggattataaaattttca------tgcatttg |
112 |
Q |
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| T |
44296016 |
gtgttcttaagattattcaaattaaatatcat-----tgaaaggaagttggcaaggtgccccaccatttggattataaaattttcacgcatttgcatttg |
44295922 |
T |
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| Q |
113 |
ctgcctttatagatcacatactatttgatcgaagttagatgactcgcattctaccattgtattttaacatataataaacgcagttcaaatgtaagtcgtt |
212 |
Q |
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| T |
44295921 |
ctgcctttacagatcacatactatttgatcgaagttagatgactcgcattctaccattgtattttaacatataataaacgcagttcaaatgtaagtcgtt |
44295822 |
T |
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| Q |
213 |
tgatttcgatcaggcgatatgcct |
236 |
Q |
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| T |
44295821 |
tgattttgatcagacgatatgcct |
44295798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 188
Target Start/End: Complemental strand, 44305044 - 44304906
Alignment:
| Q |
49 |
atatcattgaaaggaagttggcaaggtgccccaccatgtggattataaaattttcatgcatttgctgcctttatagatcacatactatttgatcgaagtt |
148 |
Q |
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| T |
44305044 |
atatcattgaaaggaagtaggcgaagtgcaccaccatgtggaccttaaaattttcatggatttgccgcttttatagatcacatactctttgttc-aaatt |
44304946 |
T |
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| Q |
149 |
agatgactcgcattctaccattgtattttaacatataata |
188 |
Q |
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| T |
44304945 |
agatgactcacattataacattgtattttaacatataata |
44304906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 218
Target Start/End: Complemental strand, 43894612 - 43894445
Alignment:
| Q |
49 |
atatcattgaaaggaagttggcaaggtgccccaccatgtggattataaaattttcatgcatttgctgcctttatagatcacatactatttgatcgaagtt |
148 |
Q |
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| T |
43894612 |
atatcattgaaaggaagttggcgaagtgcaccaccatgtggaccttgaaattttcatggatttgccgcttttattgatcacatactctttgttc-aaatt |
43894514 |
T |
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| Q |
149 |
agatgactcgcattctaccattgtattttaacatataataaacgcagttcaaatgtaagtcgtttgattt |
218 |
Q |
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| T |
43894513 |
agatgactcacattcgaacattgtattttaacatataatacacgcggtt-aaatgcgagtcatttgattt |
43894445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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