View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17225_low_13 (Length: 227)
Name: NF17225_low_13
Description: NF17225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17225_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 9e-94; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 8308606 - 8308413
Alignment:
| Q |
18 |
agagaattataaaaattatgcaaggcttgagggagtggtgctcacacctaaacatgtagcagatgctgtattgtttttagtttctaacgaggctgagttt |
117 |
Q |
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| T |
8308606 |
agagaattataaaaattatgcaaggcttgagggagtggtgctcacacctaaacatgtggcagatgctgtattgtttttagtttctaatcaggctgagttt |
8308507 |
T |
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| Q |
118 |
gtaactggtcttgatcttattgtcgatggtggatttgccaaggtataaataaatgtctaaataaattaattaaaagcaataacaacattaaaag |
211 |
Q |
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| T |
8308506 |
gtaactggtcttgatcttattgtcgatggtggatttgccaaggtataaataaatgtctaaataaataaattaaaaacaataacaacattaaaag |
8308413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 155
Target Start/End: Complemental strand, 8256828 - 8256702
Alignment:
| Q |
29 |
aaaattatgcaaggcttgagggagtggtgctcacacctaaacatgtagcagatgctgtattgtttttagtttctaacgaggctgagtttgtaactggtct |
128 |
Q |
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| T |
8256828 |
aaaaatatgcaaggcttgagggagtggtgctcacacccaaacatgtggcagatgctgtattgtttttagtttctgatcaggctgagtttattacaggcct |
8256729 |
T |
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| Q |
129 |
tgatcttattgtcgatggtggatttgc |
155 |
Q |
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| T |
8256728 |
tgatcttagggttgatggtggatttgc |
8256702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 155
Target Start/End: Complemental strand, 8259136 - 8259010
Alignment:
| Q |
29 |
aaaattatgcaaggcttgagggagtggtgctcacacctaaacatgtagcagatgctgtattgtttttagtttctaacgaggctgagtttgtaactggtct |
128 |
Q |
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| T |
8259136 |
aaaaatatgcaaggcttgagggagtggtgctcacacccaaacatgtggcagatgctgtattgtttttagtttctgatcaggctgagtttatcacagacct |
8259037 |
T |
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| Q |
129 |
tgatcttattgtcgatggtggatttgc |
155 |
Q |
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| T |
8259036 |
tgatcttagggttgatggtggatttgc |
8259010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 155
Target Start/End: Complemental strand, 8289533 - 8289412
Alignment:
| Q |
34 |
tatgcaaggcttgagggagtggtgctcacacctaaacatgtagcagatgctgtattgtttttagtttctaacgaggctgagtttgtaactggtcttgatc |
133 |
Q |
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| T |
8289533 |
tatgcaagacttgaaggagtggtgctcacacctaagcatgtggcagatgttgtattgtttttagcttcgaatgatgctgagtttgtcaccggccttgatc |
8289434 |
T |
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| Q |
134 |
ttattgtcgatggtggatttgc |
155 |
Q |
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| T |
8289433 |
ttagtgtcgacggtggatttgc |
8289412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 8324680 - 8324610
Alignment:
| Q |
65 |
ctaaacatgtagcagatgctgtattgtttttagtttctaacgaggctgagtttgtaactggtcttgatctt |
135 |
Q |
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| T |
8324680 |
ctaaacatgtggcagatgctgttttgttcttggtatccaatgaatctgactttgtaactggtcttgatctt |
8324610 |
T |
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