View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17225_low_15 (Length: 224)
Name: NF17225_low_15
Description: NF17225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17225_low_15 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 38166935 - 38166712
Alignment:
| Q |
1 |
caggagtaagctcattttgttgctgaaccgaaggaattgtagaactgattggcagcaagcacaacataggagaaatctcattctgttgtgtttgtgtctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38166935 |
caggagtaagctcattttgttgctgaaccgaaggaattgtagaactgattggcagcaagcacaacataggagaaatctcattctgttgtgtttgtgtctg |
38166836 |
T |
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| Q |
101 |
ttgcattccttgaggaggaatcacactttgtagctcaactgaaggaatctcatctcgctgttcaacagcgacagtaaccaatgtgtcattcttgtttaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38166835 |
ttgcattccttgaggaggaatcacactttgtagctcaactgaaggaatctcatctcgctgttcaacagcgacagtaaccaatgtgtcattcttgtttaag |
38166736 |
T |
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| Q |
201 |
gttgtgtcgtgaatactttttctc |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
38166735 |
gttgtgtcgtgaatactttttctc |
38166712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 38172945 - 38173168
Alignment:
| Q |
1 |
caggagtaagctcattttgttgctgaaccgaaggaattgtagaactgattggcagcaagcacaacataggagaaatctcattctgttgtgtttgtgtctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38172945 |
caggagtaagctcattttgttgctgaaccgaaggaattgtagaactgattggcagcaagcacaacataggagaaatctcattctgttgtgtttgtgtctg |
38173044 |
T |
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| Q |
101 |
ttgcattccttgaggaggaatcacactttgtagctcaactgaaggaatctcatctcgctgttcaacagcgacagtaaccaatgtgtcattcttgtttaag |
200 |
Q |
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| T |
38173045 |
ttgcattccttgaggaggaatcacactttgtagctcaactgaaggaatctcatctcgctgttcaacagcgacagtaaccaatgtgtcattcttgtttaag |
38173144 |
T |
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| Q |
201 |
gttgtgtcgtgaatactttttctc |
224 |
Q |
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| T |
38173145 |
gttgtgtcgtgaatactttttctc |
38173168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 38200169 - 38200392
Alignment:
| Q |
1 |
caggagtaagctcattttgttgctgaaccgaaggaattgtagaactgattggcagcaagcacaacataggagaaatctcattctgttgtgtttgtgtctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38200169 |
caggagtaagctcattttgttgctgaaccgaaggaattgtagaactgattggcagcaagcacaacataggagaaatctcattctgttgtgtttgtgtctg |
38200268 |
T |
|
| Q |
101 |
ttgcattccttgaggaggaatcacactttgtagctcaactgaaggaatctcatctcgctgttcaacagcgacagtaaccaatgtgtcattcttgtttaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38200269 |
ttgcattccttgaggaggaatcacactttgtagctcaactgaaggaatctcatctcgctgttcaacagcgacagtaaccaatgtgtcattcttgtttaag |
38200368 |
T |
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| Q |
201 |
gttgtgtcgtgaatactttttctc |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
38200369 |
gttgtgtcgtgaatactttttctc |
38200392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 54 - 208
Target Start/End: Complemental strand, 11491603 - 11491452
Alignment:
| Q |
54 |
agcaagcacaacataggagaaatctcattctgttgtgtttgtgtctgttgcattccttgaggaggaatcacactttgtagctcaactgaaggaatctcat |
153 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||| |||| |||||||||||||||| |
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| T |
11491603 |
agcaagcacaacataggagaaatctcattttgttgtgtttgtgtctgttgcattccttgaggaggagtctcactttgttgctcgactgaaggaatctcat |
11491504 |
T |
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| Q |
154 |
ctcgctgttcaacagcgacagtaaccaatgtgtcattcttgtttaaggttgtgtc |
208 |
Q |
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|| ||||||||||||| ||| || | |||| |||||||||||||||||||||| |
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| T |
11491503 |
ct---tgttcaacagcgagagtgactagtgtgccattcttgtttaaggttgtgtc |
11491452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 11484655 - 11484590
Alignment:
| Q |
159 |
tgttcaacagcgacagtaaccaatgtgtcattcttgtttaaggttgtgtcgtgaatactttttctc |
224 |
Q |
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||||||| || |||||| || | ||||||||| |||||||||||| |||||||||||||| ||||| |
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| T |
11484655 |
tgttcaagagggacagtgactattgtgtcattattgtttaaggttatgtcgtgaatacttcttctc |
11484590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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