View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17225_low_4 (Length: 511)
Name: NF17225_low_4
Description: NF17225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17225_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 457; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 7 - 494
Target Start/End: Original strand, 7979582 - 7980074
Alignment:
| Q |
7 |
tcgaagaaaataattacaaaacataagagtaaaaggaagcaaggaacaatagaaacctata-----actcaccattacattctcttagatttataagtct |
101 |
Q |
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| T |
7979582 |
tcgaataaaataattacaaaacataagagtaaaaggaagcaaggaacaatagaaacctataatataactcaccattacattctcttagatttataagtct |
7979681 |
T |
|
| Q |
102 |
tgccaatagctactcccataacaaaagccgctgccatagctccaaacacaccaacgaagattttgagattgggctttttcttaggcccctacgataattt |
201 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7979682 |
tgccaatagctactcccataacaaaagccgcagccatagctccaaacacaccaacgaagattttgagattgggctttttcttaggcccctacgataattt |
7979781 |
T |
|
| Q |
202 |
cattaaggttaaggaaagtgtcaaaaatacaataatgattaattcattttggtaccagacttacatgcgcatgaattgcatgcataagttggagaaacat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7979782 |
cattaaggttaaggaaagtgtcaaaaatacaataatgattaattcattttggtaccagacttacatgcgcatgaattgcatgcataagttggagaaacat |
7979881 |
T |
|
| Q |
302 |
tgtattgagactgtcatctacgccctccccttctgaagtagatgaatccatttcttacactgtaaaaattaaattaagtataactataaaattagaatgc |
401 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7979882 |
tgtattgagactgtcatctacgccttccccttctgaagtagatgaatccatttcttacactgtaaaaattaaattaagtataactataaaattagaatgc |
7979981 |
T |
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| Q |
402 |
gttttttgataaattacatgaaacctgaaaattcatgaaacattcataaataggaatataaaatcgaagtctgaataaaagttacatttaaat |
494 |
Q |
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| T |
7979982 |
gttttttgataaattacatgaaacctgaaaattcatgaaacattcattaataggaatataaaatcgaagtctgaataaaagttacatttaaat |
7980074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 7998188 - 7998295
Alignment:
| Q |
64 |
tataactcaccattacattctcttagatttataagtcttgccaatagctactcccataacaaaagccgctgccatagctccaaacacaccaacgaagatt |
163 |
Q |
| |
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||||||| |||||||||||| || |||||||||| |||| |||||||||||||| ||||| ||||||| |||||||||||||||||||| | || |
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| T |
7998188 |
tataacttaccattacattccctgagatttataaactacaccaacagctactcccataaaaaaagatgctgccacagctccaaacacaccaacgatggtt |
7998287 |
T |
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| Q |
164 |
ttgagatt |
171 |
Q |
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|||||||| |
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| T |
7998288 |
ttgagatt |
7998295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 430 - 481
Target Start/End: Original strand, 7999002 - 7999053
Alignment:
| Q |
430 |
aaattcatgaaacattcataaataggaatataaaatcgaagtctgaataaaa |
481 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
7999002 |
aaattcatgaaacattcataaatagcaatataaaatcgaagtcttaataaaa |
7999053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 24224609 - 24224669
Alignment:
| Q |
111 |
ctactcccataacaaaagccgctgccatagctccaaacacaccaacgaagattttgagatt |
171 |
Q |
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|||||| ||||| |||||| |||| || ||||||||||||| |||||| | |||||||||| |
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| T |
24224609 |
ctactcacataataaaagctgctgtcacagctccaaacacatcaacgatggttttgagatt |
24224669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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