View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17225_low_6 (Length: 342)
Name: NF17225_low_6
Description: NF17225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17225_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 336
Target Start/End: Original strand, 6063373 - 6063696
Alignment:
| Q |
13 |
gagaagaatgtgggatctgaatgactcacctgatcagagaaaaaactatgaatcagaagggtgttcaatggaaggtgatgaagttgatgttgatgaaaaa |
112 |
Q |
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| T |
6063373 |
gagaagaatgtgggatctgaatgactcacctgatcagagaaaaaactatgaatcagaagggtgttcaatggaaggtgatgaagttgatgttgatgaaaaa |
6063472 |
T |
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| Q |
113 |
ggaaaaggagttggatctgtttcaaattcaagttcatcagcaatagttatagaagatggatcggaagaagaagatggtaacatgatgaagaaaaagagta |
212 |
Q |
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| T |
6063473 |
ggaaaaggagttggatctgtttcaaattcaagttcatcagcaatagttatagaagatggatcggaagaagaagatggtaacatgacgaagaaaaagagta |
6063572 |
T |
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| Q |
213 |
gtaagatatttggattttcaatggatgatagtagtgactgtccacctgtgactagacagttttttccggtagaggattctgagatgataacaacggtggt |
312 |
Q |
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| T |
6063573 |
gtaagatatttggattttcaatggatgatagtagtgactgtccacctgtgactagacagttttttccggtagaggattctgagacgataacaacggtggt |
6063672 |
T |
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| Q |
313 |
agattcttcttccggtggtggtgg |
336 |
Q |
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| T |
6063673 |
agattcttcttccggtggtggtgg |
6063696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 39156259 - 39156215
Alignment:
| Q |
124 |
tggatctgtttcaaattcaagttcatcagcaatagttatagaaga |
168 |
Q |
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| T |
39156259 |
tggatctgtttcaaattcaagctcttcagctatagtaatagaaga |
39156215 |
T |
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