View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17225_low_8 (Length: 329)
Name: NF17225_low_8
Description: NF17225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17225_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 50014747 - 50014427
Alignment:
| Q |
1 |
cgatatcttcgaagtaatttctcacacttagcaactgtttggaggacttaattatttttactagagccttcataagtagtttcgtaacacaataagtgtt |
100 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50014747 |
cgatatcttcgaagtaatttctcaaaattagcaactgtttggaggtcttaattttttttactagagccttcataagtagtttcgtaacacaataagtgtt |
50014648 |
T |
|
| Q |
101 |
gaaattgtaccaagagatagtaaagaaaatataaactaacctcctgttcagtctcacatagtgaacatatcacctgaaaagttaagagcacttattacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50014647 |
gaaattgtaccaagagatagtaaagaaaatataaactaacctcctgttcagtctcacatagtgaacatatcacctgaaaagttaagagcacttattacca |
50014548 |
T |
|
| Q |
201 |
ttgcctcatcagaaaaataacaacagcaaaagcgatcacaaaattgcagatcttcaatgaggtgttaaaatagacgaacatacttgtttgacttgatggc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50014547 |
ttgcctcatcagaaaaataacaacagcaaaagcgatcacaaaattgcagatcttcaatgaggtgttaaaatagacgaacatacttgtttgacttgatggc |
50014448 |
T |
|
| Q |
301 |
ggggaatgtcgtgcctatgct |
321 |
Q |
| |
|
||||||||||||| ||||||| |
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| T |
50014447 |
ggggaatgtcgtgtctatgct |
50014427 |
T |
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