View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17226_high_11 (Length: 249)
Name: NF17226_high_11
Description: NF17226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17226_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 22 - 233
Target Start/End: Original strand, 39232866 - 39233080
Alignment:
| Q |
22 |
gcatcaagtccaccaccacaactaa-tgcaacaactacacttgagtttaaggttgcttggttgtccctgnnnnnnnnnnnnnnn--gaattaaggtgact |
118 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39232866 |
gcatcaaatccaccaccacaactaaatgcaacaactacacttgagtttaaggttgcttggttgtccctgaaaaaaaaaacaaaaaagaattaaggtgact |
39232965 |
T |
|
| Q |
119 |
tggagttggatggacgttgcttaaagttcaactgctacggctttgttaagtaaacttgccctatagataaaagaaattcaaccaatccaatttctttggt |
218 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39232966 |
tggagttggaaggacgttgcttaaagttcaactgctacggctttgttaagtaaacttgccccatagataaaagaaattcaaccaatccaatttctttggt |
39233065 |
T |
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| Q |
219 |
tgcttaaaaatcaac |
233 |
Q |
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||||||||||||||| |
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| T |
39233066 |
tgcttaaaaatcaac |
39233080 |
T |
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