View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17226_high_12 (Length: 238)
Name: NF17226_high_12
Description: NF17226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17226_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29115259 - 29115471
Alignment:
| Q |
1 |
ctattatatgctatgctttatatgcaat-ttatgcatgcaatgtaatctttccttaaatcttgtagttttatactcacaaaccaccttatcaattccata |
99 |
Q |
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| T |
29115259 |
ctattatatgctatgctttatatgcaatgttatgcatgcaatgtaatctttccttaaatcttgt---------ctcagaaaccaccttatcaattccata |
29115349 |
T |
|
| Q |
100 |
aaatcacaaactcctcataattaataaaatttctttaaacatctaaagataaaattaacggaaagtcacttgaaatcaataaaattctcaatttcacata |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29115350 |
aaatcacaaactcctcataattaataaaatttctttaaacatctaaagataaaatcaacggaaagtcacttgaaatcaataaaattctcaatttcacata |
29115449 |
T |
|
| Q |
200 |
tcaacaatcatatatataaatc |
221 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
29115450 |
tcaacaatcatatatataaatc |
29115471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 31211411 - 31211316
Alignment:
| Q |
118 |
aattaataaaatttctttaaacatctaaagataaaattaacggaaagtcacttgaaatcaataaaattctcaatttcacatatcaacaatcatata |
213 |
Q |
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| T |
31211411 |
aattaataaaatttctcaaaacctctaaagacaaaatcaacgaagagtcaccttaaatcactaaaatccacaatttcacatatcaacaatcatata |
31211316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 221
Target Start/End: Original strand, 46002473 - 46002608
Alignment:
| Q |
85 |
cttatcaattccataaaatcacaaactcctcataattaataaaatttctttaaacatctaaagataaaattaacggaaagtcacttgaaatcaataaaat |
184 |
Q |
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| T |
46002473 |
cttatcaactccacaaaatcaccaacacctca-aattaataaaatttctcaaaacctctgaggacaaaatcaacaaagagtcaccttttatcaataaaat |
46002571 |
T |
|
| Q |
185 |
tctcaatttcacatatcaacaatcatatatataaatc |
221 |
Q |
| |
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| T |
46002572 |
ttacaatttcacgtatcaacaatcatatacataaatc |
46002608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 215
Target Start/End: Original strand, 18926891 - 18927021
Alignment:
| Q |
86 |
ttatcaattccataaaatcacaaactcctcataattaataaaatttctttaaacatctaaag-ataaaattaacggaaagtcacttgaaatcaataaaat |
184 |
Q |
| |
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|||||||||||| ||||| || || | ||||||||| ||||||||| | | | ||||||| | ||||| ||| | |||||||| |||| ||| |||| |
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| T |
18926891 |
ttatcaattccacaaaattactaaaacttcataattactaaaatttcataagatatctaaattacaaaatccacgaagagtcactttaaattaatcaaat |
18926990 |
T |
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| Q |
185 |
tctcaatttcacatatcaacaatcatatata |
215 |
Q |
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|| |||||||||||||||||||| |||||| |
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|
| T |
18926991 |
tccaaatttcacatatcaacaatcctatata |
18927021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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