View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17226_high_6 (Length: 390)
Name: NF17226_high_6
Description: NF17226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17226_high_6 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 156 - 390
Target Start/End: Complemental strand, 238813 - 238579
Alignment:
| Q |
156 |
aaaatacaattatgtgtcatgtgtttaactttattctacgtaccaagcatgccaaaggtaaaagccaaagtgttgtgactaatggccatgtttttgactt |
255 |
Q |
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| T |
238813 |
aaaatacaattatgtgtcatgtgtttaactttatgctacgtaccaagcatgccaaaggtaaaagccaaagtgttgtgactaatggccatgtttttgactt |
238714 |
T |
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| Q |
256 |
cagcaacaacaacaacaactacacaaaatattagagggtgcagtgcaggnnnnnnnnnnnnnnnaactatattcttccaaactcaaaccttaaaacacgt |
355 |
Q |
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| T |
238713 |
cagcaacaacaacaacaactacacaaaatattagagggtgcagtgcagggagagagaggagagaaactatattcttccaaactcaaaccctaaaacacgt |
238614 |
T |
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| Q |
356 |
gcatgcagttattattgatgctgatggtgaggagg |
390 |
Q |
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| T |
238613 |
gcatgcagttattattgatgctgatggtgaggagg |
238579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 239023 - 238909
Alignment:
| Q |
1 |
cgaaatgacgttacctgtacatatgtatataaaaggttaaaagtgtttatgtgtgaaaaatgtggtagtaaggtgctaaaatgaagtgggattaacctat |
100 |
Q |
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| T |
239023 |
cgaaatgacgttacctgtacatatgtatataaaaggttaaaagtgtttatgtgtgaaaaatgtggtagtaaggtgctaaaatgaagtgggattaacctat |
238924 |
T |
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| Q |
101 |
atgcattgattttta |
115 |
Q |
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| T |
238923 |
atgcattgatattta |
238909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 224817 - 224766
Alignment:
| Q |
196 |
taccaagcatgccaaaggtaaaagccaaagtgttgtgactaatggccatgtt |
247 |
Q |
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| T |
224817 |
tacctagcatgccaaaggcaaatgccaaagtgttgtgactgattgccatgtt |
224766 |
T |
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