View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17226_low_1 (Length: 667)

Name: NF17226_low_1
Description: NF17226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17226_low_1
NF17226_low_1
[»] chr7 (17 HSPs)
chr7 (254-647)||(16543909-16544305)
chr7 (254-647)||(16621357-16621753)
chr7 (12-175)||(16544381-16544544)
chr7 (12-175)||(16621118-16621281)
chr7 (301-437)||(16911195-16911332)
chr7 (301-407)||(17515792-17515900)
chr7 (301-407)||(17537314-17537422)
chr7 (301-407)||(559885-559992)
chr7 (301-407)||(569794-569901)
chr7 (301-349)||(38411779-38411827)
chr7 (301-347)||(5200601-5200647)
chr7 (301-347)||(5209730-5209776)
chr7 (301-347)||(27967388-27967434)
chr7 (301-347)||(27976841-27976887)
chr7 (306-362)||(16474424-16474480)
chr7 (301-339)||(15974747-15974785)
chr7 (301-353)||(4185173-4185225)
[»] chr1 (10 HSPs)
chr1 (262-590)||(20500660-20500982)
chr1 (9-175)||(20501052-20501218)
chr1 (301-429)||(18750118-18750247)
chr1 (301-339)||(13463839-13463877)
chr1 (301-353)||(18597086-18597138)
chr1 (301-339)||(3650804-3650842)
chr1 (601-650)||(20500632-20500680)
chr1 (304-339)||(179827-179862)
chr1 (301-331)||(8402128-8402158)
chr1 (301-333)||(35197953-35197985)
[»] chr2 (23 HSPs)
chr2 (9-164)||(31355990-31356145)
chr2 (276-354)||(17686355-17686433)
chr2 (605-650)||(31356551-31356596)
chr2 (301-357)||(21851540-21851596)
chr2 (301-357)||(21859975-21860031)
chr2 (301-347)||(25262588-25262634)
chr2 (301-347)||(33308187-33308233)
chr2 (301-339)||(21322005-21322043)
chr2 (301-339)||(34543048-34543086)
chr2 (300-353)||(39756287-39756340)
chr2 (301-353)||(27425290-27425342)
chr2 (301-353)||(27440336-27440388)
chr2 (276-339)||(20622461-20622524)
chr2 (301-336)||(34529074-34529109)
chr2 (305-339)||(22186093-22186127)
chr2 (301-350)||(28479928-28479977)
chr2 (274-347)||(44373736-44373808)
chr2 (274-347)||(44389647-44389719)
chr2 (301-353)||(21150015-21150067)
chr2 (305-340)||(25995531-25995566)
chr2 (302-348)||(27605541-27605587)
chr2 (301-334)||(4281573-4281606)
chr2 (306-339)||(25193113-25193146)
[»] chr3 (17 HSPs)
chr3 (301-437)||(4504932-4505070)
chr3 (9-103)||(18040180-18040274)
chr3 (301-347)||(1005749-1005795)
chr3 (301-353)||(2216563-2216615)
chr3 (301-353)||(16289542-16289594)
chr3 (301-339)||(52987461-52987499)
chr3 (301-338)||(11262289-11262326)
chr3 (301-353)||(4444344-4444396)
chr3 (304-351)||(13603387-13603435)
chr3 (301-339)||(1775843-1775881)
chr3 (301-339)||(4887696-4887734)
chr3 (301-339)||(5517769-5517807)
chr3 (301-347)||(9184899-9184944)
chr3 (301-339)||(18954624-18954661)
chr3 (301-339)||(20053182-20053220)
chr3 (301-339)||(20075842-20075880)
chr3 (301-333)||(23755546-23755578)
[»] chr5 (8 HSPs)
chr5 (254-353)||(29185221-29185320)
chr5 (301-357)||(31549535-31549591)
chr5 (276-339)||(31411817-31411880)
chr5 (276-339)||(31422725-31422788)
chr5 (301-339)||(23568476-23568514)
chr5 (302-336)||(29189260-29189294)
chr5 (301-340)||(8949136-8949175)
chr5 (301-339)||(2826877-2826915)
[»] chr6 (15 HSPs)
chr6 (301-407)||(27048677-27048785)
chr6 (301-407)||(27058921-27059029)
chr6 (301-347)||(30996951-30996997)
chr6 (301-353)||(3042390-3042442)
chr6 (301-350)||(16587801-16587850)
chr6 (301-350)||(16607530-16607579)
chr6 (303-347)||(15390685-15390729)
chr6 (301-339)||(1141768-1141806)
chr6 (301-339)||(5488168-5488206)
chr6 (301-339)||(5995695-5995733)
chr6 (301-339)||(20216028-20216066)
chr6 (301-339)||(22110049-22110087)
chr6 (279-353)||(24919166-24919240)
chr6 (301-353)||(24296431-24296483)
chr6 (301-353)||(24310462-24310514)
[»] scaffold1120 (1 HSPs)
scaffold1120 (301-354)||(384-437)
[»] chr4 (12 HSPs)
chr4 (605-650)||(21400774-21400819)
chr4 (276-339)||(12997538-12997601)
chr4 (301-339)||(4749047-4749085)
chr4 (301-336)||(20866843-20866878)
chr4 (301-339)||(772289-772327)
chr4 (301-339)||(32215932-32215970)
chr4 (301-353)||(17141861-17141913)
chr4 (301-353)||(24923280-24923332)
chr4 (301-340)||(48077644-48077683)
chr4 (309-339)||(638076-638106)
chr4 (301-339)||(5405296-5405334)
chr4 (301-339)||(52296741-52296779)
[»] scaffold0027 (1 HSPs)
scaffold0027 (276-354)||(64648-64726)
[»] chr8 (10 HSPs)
chr8 (299-339)||(36577969-36578009)
chr8 (276-339)||(4838693-4838756)
chr8 (276-339)||(26872637-26872700)
chr8 (307-353)||(23091551-23091597)
chr8 (276-347)||(17663609-17663679)
chr8 (276-347)||(17682765-17682835)
chr8 (301-339)||(4836512-4836550)
chr8 (301-339)||(4841957-4841995)
chr8 (301-339)||(26875120-26875158)
chr8 (301-339)||(2750241-2750279)
[»] scaffold0016 (1 HSPs)
scaffold0016 (302-347)||(24491-24536)
[»] scaffold0609 (1 HSPs)
scaffold0609 (301-353)||(2505-2557)
[»] scaffold0206 (1 HSPs)
scaffold0206 (301-353)||(19505-19557)
[»] scaffold1896 (1 HSPs)
scaffold1896 (276-339)||(444-507)
[»] scaffold2141 (1 HSPs)
scaffold2141 (301-339)||(159-197)
[»] scaffold0669 (1 HSPs)
scaffold0669 (303-339)||(6035-6071)
[»] scaffold0853 (1 HSPs)
scaffold0853 (279-353)||(4260-4334)


Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 254 - 647
Target Start/End: Complemental strand, 16544305 - 16543909
Alignment:
Q  254 tgaagaacatgaagaacaatcttcatcttctccgacgggactgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 353  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  16544305 tgaagaacatgaagaacaatcttcatcttctccgacgggattgtatcttccagcgcggtggccggtggtggcaccaccgcaccggaatttcaaactcctc 16544206  T
Q  354 ttttctaaaaaac---ttaacaatttcgaaattcctttttcgttctaaactcaaatctggattcacaatttcaaaaacagttcacaaacactctagatct 450  Q
    ||||||||||||    |||||| |||||||||||| ||||||||||||| |||||||  |||||| ||||||||||||||||||||||||||||||||||    
T  16544205 ttttctaaaaaaacttttaacagtttcgaaattccattttcgttctaaattcaaatccagattcataatttcaaaaacagttcacaaacactctagatct 16544106  T
Q  451 aagattaaacacggcacaaagaaacaaaaatgaaactaccttttcttctctttttggattggtttatttgttgtagcttgtgatgattccggttcgttcc 550  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16544105 aagattaaacacggcacaaagaaacaaaaatgaaactaccttttcttctctttttggattggtttatttgttgtagcttgtgatgatttcggttcgttcc 16544006  T
Q  551 tccttcttcaccttcaggtccgattcgaactcgtttgatgcttgtgtgagccgatttgaactcgtttggatgtagaaagtggcgagatgataataga 647  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16544005 tccttcttcaccttcaggtccgattcgaactcgtttgatgcttgtgtgagccgatttgaactcgtttggatgtagaaagtggcgagatgataataga 16543909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 254 - 647
Target Start/End: Original strand, 16621357 - 16621753
Alignment:
Q  254 tgaagaacatgaagaacaatcttcatcttctccgacgggactgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 353  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  16621357 tgaagaacatgaagaacaatcttcatcttctccgacgggattgtatcttccagcgcggtggccggtggtggcaccaccgcaccggaatttcaaactcctc 16621456  T
Q  354 ttttctaaaaaac---ttaacaatttcgaaattcctttttcgttctaaactcaaatctggattcacaatttcaaaaacagttcacaaacactctagatct 450  Q
    ||||||||||||    |||||| |||||||||||| ||||||||||||| |||||||  |||||| ||||||||||||||||||||||||||||||||||    
T  16621457 ttttctaaaaaaacttttaacagtttcgaaattccattttcgttctaaattcaaatccagattcataatttcaaaaacagttcacaaacactctagatct 16621556  T
Q  451 aagattaaacacggcacaaagaaacaaaaatgaaactaccttttcttctctttttggattggtttatttgttgtagcttgtgatgattccggttcgttcc 550  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16621557 aagattaaacacggcacaaagaaacaaaaatgaaactaccttttcttctctttttggattggtttatttgttgtagcttgtgatgatttcggttcgttcc 16621656  T
Q  551 tccttcttcaccttcaggtccgattcgaactcgtttgatgcttgtgtgagccgatttgaactcgtttggatgtagaaagtggcgagatgataataga 647  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16621657 tccttcttcaccttcaggtccgattcgaactcgtttgatgcttgtgtgagccgatttgaactcgtttggatgtagaaagtggcgagatgataataga 16621753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 16544544 - 16544381
Alignment:
Q  12 aaaggcgcaccagattaaaagacagtttcaacaacagccatcagatcgtggaaatatccagatctggtggcacaaaaacatgagggagcatgagataacc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  16544544 aaaggcgcaccagattaaaagacagtttcaacaacagccatcagatcgtggaattatccagatctggtggcacaaaaacatgagggagcatgagataacg 16544445  T
Q  112 gtggatgcacgcgcgtgggatcgggagtgagtataaaaggaatattctggtttaagatttcatt 175  Q
    | |||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  16544444 gaggatgcacacgcgtgggatcgagagtgagtataaaaggaatattctgatttaagatttcatt 16544381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 16621118 - 16621281
Alignment:
Q  12 aaaggcgcaccagattaaaagacagtttcaacaacagccatcagatcgtggaaatatccagatctggtggcacaaaaacatgagggagcatgagataacc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  16621118 aaaggcgcaccagattaaaagacagtttcaacaacagccatcagatcgtggaattatccagatctggtggcacaaaaacatgagggagcatgagataacg 16621217  T
Q  112 gtggatgcacgcgcgtgggatcgggagtgagtataaaaggaatattctggtttaagatttcatt 175  Q
    | |||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  16621218 gaggatgcacacgcgtgggatcgagagtgagtataaaaggaatattctgatttaagatttcatt 16621281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 301 - 437
Target Start/End: Original strand, 16911195 - 16911332
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctcttttctaaaaa-acttaacaatttcgaaattcctttttcgttctaaa 399  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||   |||||| ||| |||||||||||||||||||| |    
T  16911195 ttccggcgcggtggccggtggtggcaccaccacgctggaatttcaaactcctcttttctaaaaacttttaacagttttgaaattcctttttcgttctaga 16911294  T
Q  400 ctcaaatctggattcacaatttcaaaaacagttcacaa 437  Q
    |||||||| |||||||||||||||||||||||||||||    
T  16911295 ctcaaatccggattcacaatttcaaaaacagttcacaa 16911332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 301 - 407
Target Start/End: Original strand, 17515792 - 17515900
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctcttttctaaaaaacttaa--caatttcgaaattcctttttcgttctaa 398  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||   ||  || |||| ||| ||||||||||||||||    
T  17515792 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctctttttttaaaaaaaaaatacagtttctaaaatcctttttcgttctaa 17515891  T
Q  399 actcaaatc 407  Q
    || ||||||    
T  17515892 acccaaatc 17515900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 301 - 407
Target Start/End: Complemental strand, 17537422 - 17537314
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctcttttctaaaaaacttaa--caatttcgaaattcctttttcgttctaa 398  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||   ||  || |||| ||| ||||||||||||||||    
T  17537422 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctctttttttaaaaaaaaaatacagtttctaaaatcctttttcgttctaa 17537323  T
Q  399 actcaaatc 407  Q
    || ||||||    
T  17537322 acccaaatc 17537314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 301 - 407
Target Start/End: Original strand, 559885 - 559992
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctcttttcta-aaaaacttaacaatttcgaaattcctttttcgttctaaa 399  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |  |||||   |||| |||| ||| |||||||||||||||||    
T  559885 ttccagcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctcttttttttaaaaaaaaaacagtttctaaaatcctttttcgttctaaa 559984  T
Q  400 ctcaaatc 407  Q
    | ||||||    
T  559985 cccaaatc 559992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 301 - 407
Target Start/End: Original strand, 569794 - 569901
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctcttttcta-aaaaacttaacaatttcgaaattcctttttcgttctaaa 399  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |  |||||   |||| |||| ||| |||||||||||||||||    
T  569794 ttccagcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctcttttttttaaaaaaaaaacagtttctaaaatcctttttcgttctaaa 569893  T
Q  400 ctcaaatc 407  Q
    | ||||||    
T  569894 cccaaatc 569901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 38411827 - 38411779
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaact 349  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38411827 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaact 38411779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 5200601 - 5200647
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  5200601 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 5200647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 5209730 - 5209776
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  5209730 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 5209776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 27967388 - 27967434
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  27967388 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 27967434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 27976841 - 27976887
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  27976841 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 27976887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 306 - 362
Target Start/End: Original strand, 16474424 - 16474480
Alignment:
Q  306 gcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctcttttctaaa 362  Q
    |||||||||||| ||||||||||||||||||||| ||| ||||||||| ||||||||    
T  16474424 gcgcggtggccgatggtggcaccaccgcgccggagttttaaactcctcctttctaaa 16474480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 15974785 - 15974747
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15974785 ttccggcgcggtggccggtggtggcaccaccgcgccgga 15974747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 4185225 - 4185173
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 353  Q
    |||||||||||||||||| |||||||||||||||||||| ||  |||||||||    
T  4185225 ttccggcgcggtggccggcggtggcaccaccgcgccggagttcgaaactcctc 4185173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 262 - 590
Target Start/End: Complemental strand, 20500982 - 20500660
Alignment:
Q  262 atgaagaacaatcttcatcttctccgacgggactgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctcttttctaa 361  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||       |||||||||| ||||||| |||||||||||||||||||||    
T  20500982 atgaagaacaatcttcatcttctccgacgggattgtatcttccggcgcggtgg-------tggcaccaccacgccggagtttcaaactcctcttttctaa 20500890  T
Q  362 aaaactt-aacaatttcgaaattcctttttcgttctaaactcaaatctggattcacaatttcaaaaacagttcacaaacactctagatctaagattaaac 460  Q
    |||  || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  20500889 aaacttttaacaatttcgaaattcctttttcgttctaaactcaaatccggattcacaatttcaaaaacagttcacaaacactgtagatttaagattaaac 20500790  T
Q  461 acggcacaaagaaacaaaaatgaaactaccttttcttctctttttggattggtttatttgttgtagcttgtgatgattccggttcgttcctccttcttca 560  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  20500789 acggcacaaagaaacaaaaatgaaactaccttttcttctctttttggattggtttatttgttttagcttgtgatgattccggttcgttcctcctacttca 20500690  T
Q  561 ccttcaggtccgattcgaactcgtttgatg 590  Q
    ||||||||||||||||||||||||||||||    
T  20500689 ccttcaggtccgattcgaactcgtttgatg 20500660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 20501218 - 20501052
Alignment:
Q  9 agcaaaggcgcaccagattaaaagacagtttcaacaacagccatcagatcgtggaaatatccagatctggtggcacaaaaacatgagggagcatgagata 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  20501218 agcaaaggcgcaccagattaaaagacagtttcaacaacagccatcagatcgtggaactatcaagatctggtggcacaaaaacatgagggagcatgagata 20501119  T
Q  109 accgtggatgcacgcgcgtgggatcgggagtgagtataaaaggaatattctggtttaagatttcatt 175  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||    
T  20501118 acggtggatgcacgcgcgtgggatcgagagtgagtataaaaggaatattctgattaaagatttcatt 20501052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 301 - 429
Target Start/End: Complemental strand, 18750247 - 18750118
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcc-tcttttctaaaaaacttaacaatttcgaaattcctttttcgttctaaa 399  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||| |  |||  || | | |||| ||| |||||||||||||||||    
T  18750247 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctttttttttttaaatttttatagtttctaaaatcctttttcgttctaaa 18750148  T
Q  400 ctcaaatctggattcacaatttcaaaaaca 429  Q
    | |||||| ||  ||| |||||| ||||||    
T  18750147 cccaaatccggtctcagaatttccaaaaca 18750118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 13463877 - 13463839
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13463877 ttccggcgcggtggccggtggtggcaccaccgcgccgga 13463839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 18597138 - 18597086
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 353  Q
    |||||||||||||||||| |||||||||||||||||||| ||  |||||||||    
T  18597138 ttccggcgcggtggccggcggtggcaccaccgcgccggagttcgaaactcctc 18597086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 3650842 - 3650804
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  3650842 ttccggcgcggtggccggtggtggcaccgccgcgccgga 3650804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 601 - 650
Target Start/End: Complemental strand, 20500680 - 20500632
Alignment:
Q  601 ccgatttgaactcgtttggatgtagaaagtggcgagatgataatagatga 650  Q
    |||||| ||||||||||| ||||||||||||||||||||||||| |||||    
T  20500680 ccgattcgaactcgtttg-atgtagaaagtggcgagatgataatggatga 20500632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 304 - 339
Target Start/End: Original strand, 179827 - 179862
Alignment:
Q  304 cggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    ||||||| ||||||||||||||||||||||||||||    
T  179827 cggcgcgatggccggtggtggcaccaccgcgccgga 179862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 331
Target Start/End: Complemental strand, 8402158 - 8402128
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccacc 331  Q
    |||||||||||||||||||||||||||||||    
T  8402158 ttccggcgcggtggccggtggtggcaccacc 8402128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 333
Target Start/End: Complemental strand, 35197985 - 35197953
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgc 333  Q
    |||||||||||||||| ||||||||||||||||    
T  35197985 ttccggcgcggtggcctgtggtggcaccaccgc 35197953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 5e-61; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 9 - 164
Target Start/End: Original strand, 31355990 - 31356145
Alignment:
Q  9 agcaaaggcgcaccagattaaaagacagtttcaacaacagccatcagatcgtggaaatatccagatctggtggcacaaaaacatgagggagcatgagata 108  Q
    ||||| ||||||||||||||||||| |||||||||||  ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||    
T  31355990 agcaagggcgcaccagattaaaagatagtttcaacaatggccatcagatcgtggaactatccagatctggtggcgcaaaaacatgaaggagcatgagata 31356089  T
Q  109 accgtggatgcacgcgcgtgggatcgggagtgagtataaaaggaatattctggttt 164  Q
    || ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31356090 acggtggatgcacgcgcgtgggatcgagagtgagtataaaaggaatattctggttt 31356145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 276 - 354
Target Start/End: Original strand, 17686355 - 17686433
Alignment:
Q  276 tcatcttctccgacgggactgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctct 354  Q
    |||||||||||| || ||| || | |||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  17686355 tcatcttctccggcgagacagtgttttccggcgcgatggccggtggtggcaccaccgcgccggagtttcaaactcctct 17686433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 605 - 650
Target Start/End: Original strand, 31356551 - 31356596
Alignment:
Q  605 tttgaactcgtttggatgtagaaagtggcgagatgataatagatga 650  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31356551 tttgaactcgtttggatgtagaaagtggcgagatgataatagatga 31356596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 21851540 - 21851596
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctctttt 357  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||    
T  21851540 ttccggcgcggtggccggtggtggcaccaccgcgccggagttttaaactcctttttt 21851596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 21859975 - 21860031
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctctttt 357  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||    
T  21859975 ttccggcgcggtggccggtggtggcaccaccgcgccggagttttaaactcctttttt 21860031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 25262634 - 25262588
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  25262634 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 25262588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 33308187 - 33308233
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  33308187 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 33308233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 21322005 - 21322043
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21322005 ttccggcgcggtggccggtggtggcaccaccgcgccgga 21322043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 34543048 - 34543086
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34543048 ttccggcgcggtggccggtggtggcaccaccgcgccgga 34543086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 300 - 353
Target Start/End: Complemental strand, 39756340 - 39756287
Alignment:
Q  300 cttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 353  Q
    ||||||||||||||||||| |||||||||||||||||||| ||  |||||||||    
T  39756340 cttccggcgcggtggccggcggtggcaccaccgcgccggagttcgaaactcctc 39756287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 27425290 - 27425342
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 353  Q
    |||||||||||||||||| |||||||||||||||||||| ||  |||||||||    
T  27425290 ttccggcgcggtggccggcggtggcaccaccgcgccggagttcgaaactcctc 27425342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 27440336 - 27440388
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 353  Q
    |||||||||||||||||| |||||||||||||||||||| ||  |||||||||    
T  27440336 ttccggcgcggtggccggcggtggcaccaccgcgccggagttcgaaactcctc 27440388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 20622524 - 20622461
Alignment:
Q  276 tcatcttctccgacgggactgtatcttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||| || ||  || | |||| ||||||||||||||||||||||||||||||||||    
T  20622524 tcatcttctccggcgagatagtgttttccagcgcggtggccggtggtggcaccaccgcgccgga 20622461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 301 - 336
Target Start/End: Original strand, 34529074 - 34529109
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgcc 336  Q
    ||||||||||||||||||||||||||||||||||||    
T  34529074 ttccggcgcggtggccggtggtggcaccaccgcgcc 34529109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 339
Target Start/End: Complemental strand, 22186127 - 22186093
Alignment:
Q  305 ggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||||||||||||||||||||||||||    
T  22186127 ggcgcggtggccggtggtggcaccaccgcgccgga 22186093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 28479977 - 28479928
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactc 350  Q
    ||||||||| ||||||||||||||| ||||||||||||| ||| ||||||    
T  28479977 ttccggcgcagtggccggtggtggcgccaccgcgccggagttttaaactc 28479928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 44373808 - 44373736
Alignment:
Q  274 cttcatcttctccgacgggactgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 347  Q
    |||||||||||||| || ||| ||   |||||||||||||||||||||| ||||||||| |||||| |||||||    
T  44373808 cttcatcttctccggcgagacagtgctttccggcgcggtggccggtggt-gcaccaccgtgccggagtttcaaa 44373736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 44389719 - 44389647
Alignment:
Q  274 cttcatcttctccgacgggactgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 347  Q
    |||||||||||||| || ||| ||   |||||||||||||||||||||| ||||||||| |||||| |||||||    
T  44389719 cttcatcttctccggcgagacagtgctttccggcgcggtggccggtggt-gcaccaccgtgccggagtttcaaa 44389647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 21150067 - 21150015
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 353  Q
    |||||||||||| || ||||||||| ||||||||||||| ||| |||||||||    
T  21150067 ttccggcgcggtagctggtggtggcgccaccgcgccggagttttaaactcctc 21150015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 340
Target Start/End: Original strand, 25995531 - 25995566
Alignment:
Q  305 ggcgcggtggccggtggtggcaccaccgcgccggaa 340  Q
    |||||||||||||||||||||||||||||| |||||    
T  25995531 ggcgcggtggccggtggtggcaccaccgcgtcggaa 25995566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 302 - 348
Target Start/End: Original strand, 27605541 - 27605587
Alignment:
Q  302 tccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaac 348  Q
    |||||| |||||||||| ||||||||||||||| |||| ||||||||    
T  27605541 tccggcacggtggccggaggtggcaccaccgcgtcggagtttcaaac 27605587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 334
Target Start/End: Complemental strand, 4281606 - 4281573
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcg 334  Q
    ||||||||||||||||||||||||||| ||||||    
T  4281606 ttccggcgcggtggccggtggtggcactaccgcg 4281573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 339
Target Start/End: Original strand, 25193113 - 25193146
Alignment:
Q  306 gcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||| |||||||||||||||||||||||||||||    
T  25193113 gcgcagtggccggtggtggcaccaccgcgccgga 25193146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 7e-54; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 301 - 437
Target Start/End: Original strand, 4504932 - 4505070
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctcttttctaaaaaac--ttaacaatttcgaaattcctttttcgttctaa 398  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||| ||| ||||||||||||||||||||     
T  4504932 ttccggcgcggtggccggtggtggcaccaccacgccggaatttcaaactcctcttttctaaaaaacttttaacagttttgaaattcctttttcgttctag 4505031  T
Q  399 actcaaatctggattcacaatttcaaaaacagttcacaa 437  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  4505032 actcaaatccggattcacaatttcaaaaacagttcacaa 4505070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 18040274 - 18040180
Alignment:
Q  9 agcaaaggcgcaccagattaaaagacagtttcaacaacagccatcagatcgtggaaatatccagatctggtggcacaaaaacatgagggagcatg 103  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18040274 agcaaaggcgcaccagattaaaagacaatttcaacaatagccatcagatcgtggaactatccagatctggtggcacaaaaacatgagggagcatg 18040180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 1005749 - 1005795
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  1005749 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 1005795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 2216563 - 2216615
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 353  Q
    |||||| |||||||||||||||||| ||||||||||||| |||||||||||||    
T  2216563 ttccggtgcggtggccggtggtggcgccaccgcgccggagtttcaaactcctc 2216615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 16289594 - 16289542
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 353  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| ||| |||||    
T  16289594 ttccggcgcggtggccggtggtggcgccaccgcgccggagttttaaagtcctc 16289542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 52987499 - 52987461
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  52987499 ttccggcgcggtggtcggtggtggcaccaccgcgccgga 52987461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 338
Target Start/End: Original strand, 11262289 - 11262326
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgg 338  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  11262289 ttccggcgcggtggccggtggtggcgccaccgcgccgg 11262326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 4444396 - 4444344
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 353  Q
    |||||||||||||||||| |||||||||||| ||||||| ||  |||||||||    
T  4444396 ttccggcgcggtggccggcggtggcaccaccacgccggagttcaaaactcctc 4444344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 13603387 - 13603435
Alignment:
Q  304 cggcgcggtggccggtggtggcaccaccgcgccgga-atttcaaactcc 351  Q
    |||||||||||||| |||||||||||||||||||||  |||||||||||    
T  13603387 cggcgcggtggccgatggtggcaccaccgcgccggagttttcaaactcc 13603435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 1775881 - 1775843
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  1775881 ttccggcgcggtggccggtggtggcgccgccgcgccgga 1775843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 4887734 - 4887696
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  4887734 ttccggcgcggtggccggtggtggcgccgccgcgccgga 4887696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 5517769 - 5517807
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  5517769 ttccggcgcggtggccggtggtggcgccgccgcgccgga 5517807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 9184899 - 9184944
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 347  Q
    |||||||||||||||||||||| ||||||||| |||||| |||||||    
T  9184899 ttccggcgcggtggccggtggt-gcaccaccgtgccggagtttcaaa 9184944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 18954624 - 18954661
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  18954624 ttccggcgcggtggccggtggt-gcaccaccgcgccgga 18954661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 20053220 - 20053182
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  20053220 ttccggcgcggtggccggtggtggcgccgccgcgccgga 20053182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 20075880 - 20075842
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  20075880 ttccggcgcggtggccggtggtggcgccgccgcgccgga 20075842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 333
Target Start/End: Original strand, 23755546 - 23755578
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgc 333  Q
    |||||||||||||||||||||||| ||||||||    
T  23755546 ttccggcgcggtggccggtggtggtaccaccgc 23755578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 254 - 353
Target Start/End: Original strand, 29185221 - 29185320
Alignment:
Q  254 tgaagaacatgaagaacaatcttcatcttctccgacgggactgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 353  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  29185221 tgaagaacatgaagaacaatcttcatcttctccgacgggattgtgtcttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctc 29185320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 31549535 - 31549591
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctctttt 357  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||    
T  31549535 ttccggcgcggtggccggtggtggcaccaccgcgccggagttttaaactcctttttt 31549591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 31411880 - 31411817
Alignment:
Q  276 tcatcttctccgacgggactgtatcttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||| || ||  || | ||||||||||||||||||||||||||||||||| |||||    
T  31411880 tcatcttctccggcgagatagtgttttccggcgcggtggccggtggtggcaccaccgcaccgga 31411817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 31422788 - 31422725
Alignment:
Q  276 tcatcttctccgacgggactgtatcttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||| || ||  || | |||||||||||||||||||||||||||||| ||||||||    
T  31422788 tcatcttctccggcgagatagtgttttccggcgcggtggccggtggtggcaccactgcgccgga 31422725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 23568514 - 23568476
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  23568514 ttccggcgcggtggccggtggtggcatcaccgcgccgga 23568476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 336
Target Start/End: Complemental strand, 29189294 - 29189260
Alignment:
Q  302 tccggcgcggtggccggtggtggcaccaccgcgcc 336  Q
    |||||||||||||||||||||||||||||||||||    
T  29189294 tccggcgcggtggccggtggtggcaccaccgcgcc 29189260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 8949136 - 8949175
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaa 340  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  8949136 ttccgacgcggtggccggtggtggcaccaccgcgtcggaa 8949175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 2826915 - 2826877
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  2826915 ttccgacgcagtggccggtggtggcaccaccgcgccgga 2826877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 301 - 407
Target Start/End: Original strand, 27048677 - 27048785
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctcttttctaaaaaactta--acaatttcgaaattcctttttcgttctaa 398  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||   |  ||| |||| ||| ||||||||||||||||    
T  27048677 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctcttttttaaaaaaaaaaatacagtttctaaaatcctttttcgttctaa 27048776  T
Q  399 actcaaatc 407  Q
    || ||||||    
T  27048777 acccaaatc 27048785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 301 - 407
Target Start/End: Original strand, 27058921 - 27059029
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctcttttctaaaaaactta--acaatttcgaaattcctttttcgttctaa 398  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||   |  ||| |||| ||| ||||||||||||||||    
T  27058921 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctcttttttaaaaaaaaaaatacagtttctaaaatcctttttcgttctaa 27059020  T
Q  399 actcaaatc 407  Q
    || ||||||    
T  27059021 acccaaatc 27059029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 30996951 - 30996997
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 347  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  30996951 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaa 30996997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 3042442 - 3042390
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 353  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| |||||||||    
T  3042442 ttccggcgcggtggccggtggtggcgccaccgcgccggagttttaaactcctc 3042390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 16587850 - 16587801
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactc 350  Q
    |||||||||||| |||||||||||| ||||||||||||| ||||||||||    
T  16587850 ttccggcgcggttgccggtggtggcgccaccgcgccggagtttcaaactc 16587801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 16607530 - 16607579
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactc 350  Q
    |||||||||||| |||||||||||| ||||||||||||| ||||||||||    
T  16607530 ttccggcgcggttgccggtggtggcgccaccgcgccggagtttcaaactc 16607579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 15390685 - 15390729
Alignment:
Q  303 ccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 347  Q
    |||||||||||||||||| |||||||||||||||||| |||||||    
T  15390685 ccggcgcggtggccggtgttggcaccaccgcgccggagtttcaaa 15390729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 1141806 - 1141768
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  1141806 ttccggcgcggtggccggtggtggcaccgccgcgccgga 1141768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 5488168 - 5488206
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  5488168 ttccggcacggtggccggtggtggcaccaccgcgccgga 5488206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 5995733 - 5995695
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  5995733 ttccggcacggtggccggtggtggcaccaccgcgccgga 5995695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 20216066 - 20216028
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  20216066 ttccggcgcggtggccggcggtggcaccaccgcgccgga 20216028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 22110087 - 22110049
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  22110087 ttccggcgcggtggccggcggtggcaccaccgcgccgga 22110049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 353
Target Start/End: Complemental strand, 24919240 - 24919166
Alignment:
Q  279 tcttctccgacgggactgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 353  Q
    |||||||||| | || || || ||||||||||||||||||  ||||||||||||||||||| ||  |||||||||    
T  24919240 tcttctccgatgagattgaattttccggcgcggtggccggcagtggcaccaccgcgccggagttcgaaactcctc 24919166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 24296431 - 24296483
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 353  Q
    |||||||||||||||||| |||||||||||| ||||||| ||  |||||||||    
T  24296431 ttccggcgcggtggccggcggtggcaccaccacgccggagttcaaaactcctc 24296483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 24310462 - 24310514
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 353  Q
    |||||||||||||||||| |||||||||||| ||||||| ||  |||||||||    
T  24310462 ttccggcgcggtggccggcggtggcaccaccacgccggagttcaaaactcctc 24310514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1120 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold1120
Description:

Target: scaffold1120; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 437 - 384
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctct 354  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  437 ttccggcgcggtggccggtggtggcaccaccgcgccggagtttcaaactcctct 384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 605 - 650
Target Start/End: Original strand, 21400774 - 21400819
Alignment:
Q  605 tttgaactcgtttggatgtagaaagtggcgagatgataatagatga 650  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  21400774 tttgaactcgtttggatgtagaaagtggcgagatgataatagatga 21400819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 12997601 - 12997538
Alignment:
Q  276 tcatcttctccgacgggactgtatcttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||| || ||  || | |||||||||||||||||||||||||||||||||||||||    
T  12997601 tcatcttctccggcgagatagtgttttccggcgcggtggccggtggtggcaccaccgcgccgga 12997538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 4749047 - 4749085
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4749047 ttccggcgcggtggccggtggtggcaccaccgcgccgga 4749085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 301 - 336
Target Start/End: Original strand, 20866843 - 20866878
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgcc 336  Q
    ||||||||||||||||||||||||||||||||||||    
T  20866843 ttccggcgcggtggccggtggtggcaccaccgcgcc 20866878  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 772327 - 772289
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  772327 ttccggcgcggtggccggtggtggcacctccgcgccgga 772289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 32215970 - 32215932
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  32215970 ttccagcgcggtggccggtggtggcaccaccgcgccgga 32215932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 17141913 - 17141861
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 353  Q
    |||||||||||| |||||||||||| ||||||||||||| ||| ||| |||||    
T  17141913 ttccggcgcggtagccggtggtggcgccaccgcgccggagttttaaaatcctc 17141861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 24923332 - 24923280
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 353  Q
    ||||||||| ||||||||||||||  ||||||||||||| ||| |||||||||    
T  24923332 ttccggcgcagtggccggtggtggtgccaccgcgccggagttttaaactcctc 24923280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 340
Target Start/End: Complemental strand, 48077683 - 48077644
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaa 340  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  48077683 ttccggcgcggtggccggtggtggcaccacctcgtcggaa 48077644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 339
Target Start/End: Original strand, 638076 - 638106
Alignment:
Q  309 cggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||||||||||||||||||||||    
T  638076 cggtggccggtggtggcaccaccgcgccgga 638106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 5405296 - 5405334
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  5405296 ttccggcgcggtggccggtggtggcgccgccgcgccgga 5405334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 52296779 - 52296741
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  52296779 ttccgacgcggtggccggtggtggcaccactgcgccgga 52296741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 276 - 354
Target Start/End: Original strand, 64648 - 64726
Alignment:
Q  276 tcatcttctccgacgggactgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctct 354  Q
    |||||||||||| || ||| || | |||||||||||||| || ||||||||||||||||||||| |||||| |||||||    
T  64648 tcatcttctccggcgagacagtgttttccggcgcggtggtcgttggtggcaccaccgcgccggagtttcaacctcctct 64726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 36577969 - 36578009
Alignment:
Q  299 tcttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36577969 tcttccggcgcggtggccggtggtggcaccaccgcgccgga 36578009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 4838693 - 4838756
Alignment:
Q  276 tcatcttctccgacgggactgtatcttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||| || ||  || | |||||||||||||||||||||||||||||||||||||||    
T  4838693 tcatcttctccggcgagatagtgttttccggcgcggtggccggtggtggcaccaccgcgccgga 4838756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 26872637 - 26872700
Alignment:
Q  276 tcatcttctccgacgggactgtatcttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||| || ||  || | |||||||||||||||||||||||||||||||||||||||    
T  26872637 tcatcttctccggcgagatagtgttttccggcgcggtggccggtggtggcaccaccgcgccgga 26872700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 23091597 - 23091551
Alignment:
Q  307 cgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 353  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||    
T  23091597 cgcggtggccggtggtggcaccaccgcgccggagttttaaactcctc 23091551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 276 - 347
Target Start/End: Original strand, 17663609 - 17663679
Alignment:
Q  276 tcatcttctccgacgggactgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 347  Q
    |||||||||||| || ||| || | |||||||||||||||||||||| ||||||||| |||||| |||||||    
T  17663609 tcatcttctccggcgagacagtgttttccggcgcggtggccggtggt-gcaccaccgtgccggagtttcaaa 17663679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 276 - 347
Target Start/End: Original strand, 17682765 - 17682835
Alignment:
Q  276 tcatcttctccgacgggactgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 347  Q
    |||||||||||| || ||| || | |||||||||||||||||||||| ||||||||| |||||| |||||||    
T  17682765 tcatcttctccggcgagacagtgttttccggcgcggtggccggtggt-gcaccaccgtgccggagtttcaaa 17682835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 4836550 - 4836512
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  4836550 ttccggcgtggtggccggtggtggcaccaccgcgccgga 4836512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 4841995 - 4841957
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  4841995 ttccggcgtggtggccggtggtggcaccaccgcgccgga 4841957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 26875120 - 26875158
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  26875120 ttccgacgcggtggccggtggtggcaccaccgcgccgga 26875158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 2750241 - 2750279
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  2750241 ttccagcgcggtggccggtggtggaaccaccgcgccgga 2750279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 24536 - 24491
Alignment:
Q  302 tccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaa 347  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||    
T  24536 tccggcgcggtggccggtggtggcaccaccgcaccggagtttcaaa 24491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 2505 - 2557
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 353  Q
    |||||||||||| |||||||||||| ||||||||||||| ||| |||||||||    
T  2505 ttccggcgcggtagccggtggtggcgccaccgcgccggagttttaaactcctc 2557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 19557 - 19505
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 353  Q
    |||||||||||||||||| |||||||||||||||||||| ||  |||||||||    
T  19557 ttccggcgcggtggccggcggtggcaccaccgcgccggagttctaaactcctc 19505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1896 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold1896
Description:

Target: scaffold1896; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 507 - 444
Alignment:
Q  276 tcatcttctccgacgggactgtatcttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||| || ||  || | ||||||||||||||||||| |||||||||||||||||||    
T  507 tcatcttctccggcgagatagtgttttccggcgcggtggccggtagtggcaccaccgcgccgga 444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2141 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold2141
Description:

Target: scaffold2141; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 197 - 159
Alignment:
Q  301 ttccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  197 ttccggcgcggtggccggtggtggcaccgccgcgccgga 159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0669 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 6035 - 6071
Alignment:
Q  303 ccggcgcggtggccggtggtggcaccaccgcgccgga 339  Q
    |||||||||||||||||||||||||||||| ||||||    
T  6035 ccggcgcggtggccggtggtggcaccaccgtgccgga 6071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 279 - 353
Target Start/End: Complemental strand, 4334 - 4260
Alignment:
Q  279 tcttctccgacgggactgtatcttccggcgcggtggccggtggtggcaccaccgcgccggaatttcaaactcctc 353  Q
    |||||||||||| || || || |||| |||||||| |||| || ||||||||||||||||| ||  |||||||||    
T  4334 tcttctccgacgagattgaattttccagcgcggtgaccggcggcggcaccaccgcgccggagttcgaaactcctc 4260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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