View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17226_low_2 (Length: 572)
Name: NF17226_low_2
Description: NF17226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17226_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 278 - 562
Target Start/End: Complemental strand, 4661869 - 4661585
Alignment:
| Q |
278 |
aagtggtcataatattgaagataagtccgaccaccacgccgacattggtgtcgatgtgtcagtgtcaacgcttcatatatcataatcatggccctaaacg |
377 |
Q |
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| T |
4661869 |
aagtggtcataatattgaagataagtccgaccaccacgccgacattggtgtcgatgtgccagtgtcaacgcttcatatatcataatcatggccctaaacg |
4661770 |
T |
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| Q |
378 |
gtagggaccatcagccatgtaatgaccatccatataaagagctgcactctgtggatgcagtccatccatcaccataaactgcatgtcttctgatggtttc |
477 |
Q |
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| T |
4661769 |
gtagggaccatcagccatgtaatgaccatccatataaagagctgcactctgtggatgcagtccatccatcaccataaactgcatgtcttctgatggtttc |
4661670 |
T |
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| Q |
478 |
cagtgcctcttcctttgatttatgaaccagttatttatttgcttctggtccaaacctgttgactcagccaatgctaccttctctg |
562 |
Q |
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| T |
4661669 |
cagtgcctcttcctttgatttatgaaccagttatttatttgcttctggtccaaacctgttgactcagccaatgctaccttctctg |
4661585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 4662143 - 4661905
Alignment:
| Q |
19 |
caacatataatgagttgtcactaccagattgtagtacgtaattacatggacaatagaagcaacagacactgacaaagaaaacaattaatatgggaaaaac |
118 |
Q |
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| T |
4662143 |
caacatataatgagttgtcactaccagattgtagtacgtaattacatggaaaatagaagcaacagacactgacaaagaaaacaattaatatgggaaaaac |
4662044 |
T |
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| Q |
119 |
tgaaacattcacactgcacaagcataaccaagtttcatactatgcttgtcataatactttgaaactagaactatatgtaaatataatgctgactgataca |
218 |
Q |
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| T |
4662043 |
tgaaacattcacactgcacaagcataaccaagtttcatgttatgcttgtcataatactttgaaactagaactatatataaatataatgctgactgataca |
4661944 |
T |
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| Q |
219 |
gtttaaacagtctttgattgtttcaccttccacttaaac |
257 |
Q |
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| T |
4661943 |
gtttaaacagtctttgattgtttcaccttccacttaaac |
4661905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 521
Target Start/End: Original strand, 37489242 - 37489300
Alignment:
| Q |
463 |
tcttctgatggtttccagtgcctcttcctttgatttatgaaccagttatttatttgctt |
521 |
Q |
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| T |
37489242 |
tcttcagatggtttccagtgtcttttcctctgattgatgaaccaattatttatctgctt |
37489300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 441 - 539
Target Start/End: Original strand, 8791891 - 8791989
Alignment:
| Q |
441 |
atccatcaccataaactgcatgtcttctgatggtttccagtgcctcttcctttgatttatgaaccagttatttatttgcttctggtccaaacctgttga |
539 |
Q |
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| T |
8791891 |
atccatcaccacaaactgcatgtcctctgaaggcttccagtgccgtttcctttgattaataaaccagttgtttatttgcttctgatcaagacctgttga |
8791989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 441 - 524
Target Start/End: Original strand, 8780396 - 8780481
Alignment:
| Q |
441 |
atccatcaccataaactgcatgtcttctgatggtttccagtgcctcttcctttgattt--atgaaccagttatttatttgcttctg |
524 |
Q |
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| T |
8780396 |
atccatcaccacaaactgcatgtcctctgaaggcttccagtgccgttttctttgattttaataaaccagttgtttatttgcttctg |
8780481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 521
Target Start/End: Original strand, 48282094 - 48282138
Alignment:
| Q |
477 |
ccagtgcctcttcctttgatttatgaaccagttatttatttgctt |
521 |
Q |
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| T |
48282094 |
ccagttccttttcctttgattaataaaccagttatttatttgctt |
48282138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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