View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17226_low_4 (Length: 489)
Name: NF17226_low_4
Description: NF17226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17226_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 5e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 133 - 297
Target Start/End: Complemental strand, 6033266 - 6033102
Alignment:
| Q |
133 |
ctaattaaaactatgtaaattatattggatctgctagaaatatagttgaactttaatttatataatataacatcaaccacactttaaatattggctagaa |
232 |
Q |
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| T |
6033266 |
ctaattaaaactatgtaaattatattggatctgctagaaatatagttgaactttaatttatataatataacatcaaccacactttaaatattggctagaa |
6033167 |
T |
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| Q |
233 |
ataatacacgcagcatataaatcctttgaagccaaactgtcacatgcccttggcagatctttgag |
297 |
Q |
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| T |
6033166 |
ataatacacgcagcatataaatcctttgaagccaaactgtcacatgcccttggcagatctttgag |
6033102 |
T |
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Target: chr7; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 330 - 473
Target Start/End: Complemental strand, 6033069 - 6032926
Alignment:
| Q |
330 |
tttagtacagaatacagacattgtctaaagggaaaaatagaacagaaaatgaaatgtctccatatgaaaacgattctttgtaaaagcacttttagaataa |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6033069 |
tttagtacagaatacagacattgtctaaagggaaaaatagaacagaaaatgaaatgtctccatatgaaaacgattctttgtaaaagcacttttagaataa |
6032970 |
T |
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| Q |
430 |
ttcattcttatgatctcagaatatgctgaaaaatatcagctaat |
473 |
Q |
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| T |
6032969 |
ttcattcttatgatctcagaatatgctgaaaaatatcagctaat |
6032926 |
T |
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