View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17226_low_7 (Length: 378)
Name: NF17226_low_7
Description: NF17226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17226_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 311
Target Start/End: Original strand, 37804034 - 37804332
Alignment:
| Q |
13 |
attatacttataatttattcacaagttttataatattaaatacacttacaagaatatttgtcaaatgataaaagataaaaggaatannnnnnnatggaac |
112 |
Q |
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| T |
37804034 |
attatacttataatttattcacaagttttataatattaaatatacttacaagaatatttgtcaaatgataaaagataaaaggaatatttttttatggaac |
37804133 |
T |
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| Q |
113 |
aaaagtagtcttttatcacgatgcactttggttccttagagaaaaacatgagaacttgatggtagagttgaaatgtcaaccaagcacgtgagaattggat |
212 |
Q |
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| T |
37804134 |
aaaagtagtcttttaacacgatgcactttggttccttagagaaaaacatgagaacttgacggtagagttgaaatgtcaaccaagcacatgagaattgaat |
37804233 |
T |
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| Q |
213 |
aggtagagttgaaatgtcaagcaagcatgaagaatgcttatatgtgtgatacatgaaatttcttgtcgccatgcgaaacacatttgtctaatactccct |
311 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
37804234 |
aggtagagttgaaatgtcaaccaagcatgaagaatgcttatatgtgtgatacatgaaatttcttgtcgccatgcgaagcccatttgtctaatactccct |
37804332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 363
Target Start/End: Original strand, 37804411 - 37804463
Alignment:
| Q |
311 |
ttttgttaatccaaatttttcttatgattagaatcagattgagtagttgatac |
363 |
Q |
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| T |
37804411 |
ttttgttgatccaaatttttcttataaatagaatcagattgagtagttgatac |
37804463 |
T |
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