View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17226_low_9 (Length: 250)
Name: NF17226_low_9
Description: NF17226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17226_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 38166401 - 38166299
Alignment:
| Q |
138 |
tctgtaattttataagaactaaacacatttttaagtcaataaaataaaataaataactttcaaacataggttaacatagactgcatacttacttgtgttc |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38166401 |
tctgtaattttataagaactaaacacatttttaactcaataaaataaaataaataactttcaaacataggttaacatagactgcatacttacttgtgttc |
38166302 |
T |
|
| Q |
238 |
atc |
240 |
Q |
| |
|
||| |
|
|
| T |
38166301 |
atc |
38166299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 38166538 - 38166476
Alignment:
| Q |
1 |
atgtgaaatattcaaattcaactaaataatatgagaagaaaatatactaatgcatccatattc |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38166538 |
atgtgaaatattcaaattcaactaaataatatgagaagaaaatatactaatgcatccatattc |
38166476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 38173342 - 38173404
Alignment:
| Q |
1 |
atgtgaaatattcaaattcaactaaataatatgagaagaaaatatactaatgcatccatattc |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38173342 |
atgtgaaatattcaaattcaactaaataatatgagaagaaaatatactaatgcatccatattc |
38173404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 38200566 - 38200628
Alignment:
| Q |
1 |
atgtgaaatattcaaattcaactaaataatatgagaagaaaatatactaatgcatccatattc |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38200566 |
atgtgaaatattcaaattcaactaaataatatgagaagaaaatatactaatgcatccatattc |
38200628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 38173479 - 38173562
Alignment:
| Q |
138 |
tctgtaattttataagaactaaacacatttttaagtcaataaaat--aaaataaataactttcaaacataggttaacatagact |
219 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| |||||||||| ||||| || ||||||||||||||||||||||||| |
|
|
| T |
38173479 |
tctgtaatttaataagaactaaacacatatttaactcaataaaataaaaaatgaaattttttcaaacataggttaacatagact |
38173562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 38200703 - 38200786
Alignment:
| Q |
138 |
tctgtaattttataagaactaaacacatttttaagtcaataaaat--aaaataaataactttcaaacataggttaacatagact |
219 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| |||||||||| ||||| || ||||||||||||||||||||||||| |
|
|
| T |
38200703 |
tctgtaatttaataagaactaaacacatatttaactcaataaaataaaaaatgaaattttttcaaacataggttaacatagact |
38200786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University