View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17227_high_3 (Length: 383)
Name: NF17227_high_3
Description: NF17227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17227_high_3 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 40 - 383
Target Start/End: Original strand, 26463554 - 26463917
Alignment:
| Q |
40 |
gttcaaaatcaaaaacctttagaaacatactcacggcttcttctctcattcccttccattcataacactttcaatgaatcaaaattaagacaaaactttc |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26463554 |
gttcaaaatcaaaaacctttagaaacatactcatggcttcttctctcattcccttccattcataacactttcaatgaatcaaaattaagacaaaactttc |
26463653 |
T |
|
| Q |
140 |
aatgaatcaatgaaccgcaattgactataacatcttgtgtgcgttgtttttgttgttcttg--------------------gcgaaggtatgtacaagta |
219 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26463654 |
aataaatcaatgaaccgcaattgactataacatcttgtgtgcgttgtttttgttgttcttgtcgacggcgaaggtacgatggcgaaggtatgtacaagta |
26463753 |
T |
|
| Q |
220 |
tcaactagcaacacatgaaaacttgaattacatttcttagcagacaggaaccatgttgtaattgtttgataacatgtgttaatccaagaggcattcacat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||| |||| |||| |
|
|
| T |
26463754 |
tcaactagcaacacatgaaaacttgaattacatttcttagcagacagaaaccatgttgtaatggtttgataacatgtgttaattcaagagacattgacat |
26463853 |
T |
|
| Q |
320 |
ccttgttgtaaattgtagtttgtataacccaactccttccctttctgcaatgattgtgaaccat |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26463854 |
ccttgttgtaaattgtagtttgtataacccaactccttccctttctgcaatgattgtgaaccat |
26463917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 26463443 - 26463481
Alignment:
| Q |
1 |
tcatcaccagcaaacatcatccacaccatgcccttttca |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26463443 |
tcatcaccagcaaacatcatccacaccatgcccttttca |
26463481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 40 - 193
Target Start/End: Original strand, 31197438 - 31197591
Alignment:
| Q |
40 |
gttcaaaatcaaaaacctttagaaacatactcacggcttcttctctcattcccttccattcataacactttcaatgaatcaaaattaagacaaaactttc |
139 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31197438 |
gttcaaaatcaaaaacctttagaaacacactcatggcttcttctctcattcccttccattcataacactttcaatgaatcaaaattaagacaaaactttc |
31197537 |
T |
|
| Q |
140 |
aatgaatcaatgaaccgcaattgactataacatcttgtgtgcgttgtttttgtt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31197538 |
aatgaatcaatgaaccgcaattgactataacatcttgtgtgcgttgtttttgtt |
31197591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 31197324 - 31197362
Alignment:
| Q |
1 |
tcatcaccagcaaacatcatccacaccatgcccttttca |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31197324 |
tcatcaccagcaaacatcatccacaccatgcccttttca |
31197362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 290 - 383
Target Start/End: Complemental strand, 49041969 - 49041876
Alignment:
| Q |
290 |
aacatgtgttaatccaagaggcattcacatccttgttgtaaattgtagtttgtataacccaactccttccctttctgcaatgattgtgaaccat |
383 |
Q |
| |
|
|||| ||||||||||||||| |||| |||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49041969 |
aacaggtgttaatccaagagacattgacattcttgttgtaaattgtagtttgtttaacccaactccttcactttctgcaatgattgtgaaccat |
49041876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 207 - 275
Target Start/End: Original strand, 48062831 - 48062902
Alignment:
| Q |
207 |
gtatgtacaagtatcaactagcaacacatgaaaacttgaat---tacatttcttagcagacaggaaccatgt |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| |
|
|
| T |
48062831 |
gtatgtacaagtatcaactagcaacacatgaaaacttgaatctgtacatttcttagcagacagaagccatgt |
48062902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University