View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17227_high_9 (Length: 266)
Name: NF17227_high_9
Description: NF17227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17227_high_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 11801864 - 11802119
Alignment:
| Q |
15 |
tatacttttgaatcggaaaaaactccgtttttgtcctaattcattcacccattcggagnnnnnnnn--gttttttcttctatatttacccatctcaagta |
112 |
Q |
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| T |
11801864 |
tatacttttgaatcggaaaaaactccgtttttgtcctagttcattcacccatttggagaaaaaaaaaagttttttcttctatatttacccatctcaagta |
11801963 |
T |
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| Q |
113 |
catgttggaggtgtgaaaagaaactctcaaaannnnnnnnnn--gagagaaaaattattttatgttggaggtgcgaaaagtgtgaactgacttttcgtgt |
210 |
Q |
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| T |
11801964 |
catgttggaggtgtgaaaagaaactctcaattttatttttttttgagggaaaaattattttatgttggaggtgcgaaaagtgtgaactgactttttgtgt |
11802063 |
T |
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| Q |
211 |
ttataaattagaacggaaggatacatgtttccaataaaatcgtacaaatatttata |
266 |
Q |
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| T |
11802064 |
ttataaattaggacggagaggtacatgtttccaataaaatcgtacaaatatttata |
11802119 |
T |
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