View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17227_low_1 (Length: 542)
Name: NF17227_low_1
Description: NF17227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17227_low_1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 3090103 - 3090644
Alignment:
| Q |
1 |
aatatcctacttataattaatgagaaaaatctctcnnnnnnnnnn-ttaatgagnnnnnnngaagaagcaaagtagcatggttatattatatttatatct |
99 |
Q |
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| T |
3090103 |
aatatcctacttataattaatgagaaaaatctctcaaaaaaaaaaattaatgagaaaaaaagaagaagcaaagtagcatggttatattatatttatatct |
3090202 |
T |
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| Q |
100 |
agggtcgatccaagcataagacggtccaaattctaaagatcttttaggccttcaaacgaattttattttacaaatattaaatatgaaagttgaaaattct |
199 |
Q |
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| T |
3090203 |
agggtcgatccaaacataagacggtccaaattctaaagatcttttaggcctccaaacgaattttactgtacaaatattaaatatgaaagttgaaaattct |
3090302 |
T |
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| Q |
200 |
atacgatgacaatgtagctcaactggtccagcaactatctcttcttgactaggttgcaagatcaaatttgactatttgagtgacaacttcttttttgtac |
299 |
Q |
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| T |
3090303 |
atacgatgacaatgtagctcaactggtccagcaactatctcttcttgactaggttgcaagatcaaatttgactatttgagtgacaacttcttttttgtac |
3090402 |
T |
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| Q |
300 |
agaaaaacttcattttaatattcaatttaaaccttaaaatttgctagatccctagctcaaaacatttgatatctaatgactaatcctcaatttctcaatt |
399 |
Q |
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| T |
3090403 |
agaaaaacttcattttaatattcaatttaaaccttaaaatttgctagatccctagctcaaaccatttgatatctaatgactaatcctcaatttctcaatt |
3090502 |
T |
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| Q |
400 |
tggacaaaccaaacatatattaatcaacctataaaacattacctagggttttattttatttaccaataaataaatgttgctagcagttggaaaaggtgta |
499 |
Q |
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| T |
3090503 |
tggacaaaccaaacatatattaatcaacctatagaacattacctagggttttattttatttaccaataaataaatgttgctagcaattggaaaaggtgta |
3090602 |
T |
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| Q |
500 |
aaactaatatnnnnnnntcctgattatatacagatacaggtag |
542 |
Q |
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| T |
3090603 |
aaactaata-aaaaaaatcatgattatatacagatacaggtag |
3090644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 403 - 542
Target Start/End: Original strand, 3082150 - 3082288
Alignment:
| Q |
403 |
acaaaccaaacatatattaatcaacctataaaacattacctagggttttattttatttaccaataaataaatgttgctagcagttggaaaaggtgtaaaa |
502 |
Q |
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| T |
3082150 |
acaaaccaaccctattttaatcaacctatagaaaattacctaaggttttattttatttaccaataagtaaatgttgctagcaattggaaaaggtgtaaaa |
3082249 |
T |
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| Q |
503 |
ctaatatnnnnnnntcctgattatatacagatacaggtag |
542 |
Q |
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| T |
3082250 |
ctaata-aaaaaaatcatgattatatacagatacaggtag |
3082288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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