View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17227_low_10 (Length: 250)

Name: NF17227_low_10
Description: NF17227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17227_low_10
NF17227_low_10
[»] chr2 (6 HSPs)
chr2 (1-239)||(40800196-40800434)
chr2 (116-239)||(17560837-17560960)
chr2 (181-235)||(41969432-41969486)
chr2 (166-239)||(31013622-31013695)
chr2 (160-239)||(147245-147324)
chr2 (128-239)||(32648159-32648269)
[»] chr4 (4 HSPs)
chr4 (165-239)||(53402563-53402637)
chr4 (116-202)||(4826286-4826372)
chr4 (122-212)||(5321853-5321943)
chr4 (165-239)||(35043074-35043148)
[»] chr3 (4 HSPs)
chr3 (96-227)||(38944516-38944647)
chr3 (188-236)||(5528343-5528391)
chr3 (62-239)||(10896176-10896353)
chr3 (197-239)||(35314100-35314142)
[»] chr7 (2 HSPs)
chr7 (116-237)||(34889995-34890116)
chr7 (116-236)||(26562993-26563113)
[»] chr1 (6 HSPs)
chr1 (95-239)||(6087483-6087626)
chr1 (99-239)||(5696707-5696846)
chr1 (120-236)||(39003230-39003350)
chr1 (198-239)||(1485450-1485491)
chr1 (118-239)||(3463567-3463688)
chr1 (196-232)||(21682563-21682599)
[»] chr6 (2 HSPs)
chr6 (165-239)||(30655836-30655910)
chr6 (62-239)||(11714245-11714421)
[»] scaffold0606 (1 HSPs)
scaffold0606 (191-239)||(1962-2010)
[»] chr8 (1 HSPs)
chr8 (165-239)||(15663527-15663601)
[»] chr5 (2 HSPs)
chr5 (116-173)||(37496755-37496812)
chr5 (165-224)||(42205020-42205076)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 40800434 - 40800196
Alignment:
Q  1 taaaaagtcaatcctataacaacgtgtggatnnnnnnnnnttgagcaaaacgtaaacgtcttgagtgagcatgctaattccggtgcacatcactgcattg 100  Q
    |||| |||||||||||||||||| |||||||         |||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||    
T  40800434 taaagagtcaatcctataacaacatgtggataaaaactttttgagcaaaatgcaaatgtcttgagtgagcatgctaattccggtgcacatcactgcattg 40800335  T
Q  101 aagcacgcccctgcacttcctgcaccgtacatgtggcttccaacgactcactgataagacaccacatttcacggaagtcattagcatctccttctcctat 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40800334 aagcacacccctgcacttcctgcaccgtacatgtggcttccaacgactcactgataagacaccacatttcacggaagtcgttagcatctccttctcctat 40800235  T
Q  201 ataagggtgatttcgcgtcaccctcaaggtacgattcat 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40800234 ataagggtgatttcgcgtcaccctcaaggtacgattcat 40800196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 239
Target Start/End: Complemental strand, 17560960 - 17560837
Alignment:
Q  116 cttcctgcaccgtacatgtggcttccaacgactcactgataagacaccacatttcacggaagtcattagcatctccttctcctatataagggtgatttcg 215  Q
    ||||||||||||||||  |||| ||||||| ||| ||||| || | || | ||||| |||| |  |||||  |||||||||||||||||||||||||  |    
T  17560960 cttcctgcaccgtacacatggcctccaacggctctctgatgaggctccgcgtttcatggaatttgttagcgcctccttctcctatataagggtgattctg 17560861  T
Q  216 cgtcaccctcaaggtacgattcat 239  Q
    ||||||||||||||||| ||||||    
T  17560860 cgtcaccctcaaggtacaattcat 17560837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 41969486 - 41969432
Alignment:
Q  181 ttagcatctccttctcctatataagggtgatttcgcgtcaccctcaaggtacgat 235  Q
    |||||| |||||||  |||||||||||||| ||||||||||||||||||||||||    
T  41969486 ttagcacctccttcctctatataagggtgacttcgcgtcaccctcaaggtacgat 41969432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 31013695 - 31013622
Alignment:
Q  166 atttcacggaagtcattagcatctccttctcctatataagggtgatttcgcgtcaccctcaaggtacgattcat 239  Q
    |||||||||||| | |||||  ||||||||||||||||| ||||||| | ||||||  ||||||||||||||||    
T  31013695 atttcacggaagccgttagcgcctccttctcctatataaaggtgattccacgtcacagtcaaggtacgattcat 31013622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 147324 - 147245
Alignment:
Q  160 caccacatttcacggaagtcattagcatctccttctcctatataagggtgatttcgcgtcaccctcaaggtacgattcat 239  Q
    |||||||||||||| ||||  |||||  |||||||  ||||||||||||||  | ||||||||||||||||||| |||||    
T  147324 caccacatttcacgaaagtggttagcgcctccttcctctatataagggtgaccttgcgtcaccctcaaggtacgtttcat 147245  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 32648269 - 32648159
Alignment:
Q  128 tacatgtggcttccaacgactcactgataagacaccacatttcacggaagtcattagcatctccttctcctatataagggtgatttcgcgtcaccctcaa 227  Q
    |||||||||| ||||||  ||  ||||| || ||||| |||||||||||| | ||||||  |||||||||||||||| ||||| |   ||||||| ||||    
T  32648269 tacatgtggcctccaacagcttcctgatgaggcacca-atttcacggaagccgttagcacatccttctcctatataaaggtgactcaacgtcaccttcaa 32648171  T
Q  228 ggtacgattcat 239  Q
    ||||| ||||||    
T  32648170 ggtacaattcat 32648159  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 53402637 - 53402563
Alignment:
Q  165 catttcacggaagtcattagcatctccttctcctatataagggtgatttcgcgtcaccctcaaggtacgattcat 239  Q
    ||||||||||||| | |||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  53402637 catttcacggaagacgttagcgcctcattctcctatataagggtgatttcgcgtcaccctcaaggtacgattcat 53402563  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 202
Target Start/End: Complemental strand, 4826372 - 4826286
Alignment:
Q  116 cttcctgcaccgtacatgtggcttccaacgactcactgataagacaccacatttcacggaagtcattagcatctccttctcctatat 202  Q
    |||||||||||||||| ||||| | ||||| |||  |||| || | |  ||||||||||||||| |||||  |||||||||||||||    
T  4826372 cttcctgcaccgtacacgtggccttcaacgtctctttgatgaggcgctgcatttcacggaagtcgttagcgcctccttctcctatat 4826286  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 212
Target Start/End: Original strand, 5321853 - 5321943
Alignment:
Q  122 gcaccgtacatgtggcttccaacgactcactgataagacaccacatttcacggaagtcattagcatctccttctcctatataagggtgatt 212  Q
    |||| ||||| ||||| |||||| | || ||||| || | ||||||||||| |||||| ||||  ||||||||| |||||||| |||||||    
T  5321853 gcactgtacacgtggcctccaactattccctgatgaggcgccacatttcacagaagtcgttagtgtctccttcttctatataaaggtgatt 5321943  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 35043074 - 35043148
Alignment:
Q  165 catttcacggaagtcattagcatctccttctcctatataagggtgatttcgcgtcaccctcaaggtacgattcat 239  Q
    |||| |||||||||  |||||  |||||||  |||||||| ||||| | |||||||||||||| |||||||||||    
T  35043074 cattacacggaagtagttagcgcctccttcctctatataatggtgactccgcgtcaccctcaatgtacgattcat 35043148  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 96 - 227
Target Start/End: Original strand, 38944516 - 38944647
Alignment:
Q  96 cattgaagcacgcccctgcacttcctgcaccgtacatgtggcttccaacgactcactgataagacaccacatttcacggaagtcattagcatctccttct 195  Q
    ||||||| ||||||||||| ||||||||||| |||||||||| |||||||| || ||||| || || |||||||||||||||   |||||  |  | |||    
T  38944516 cattgaaacacgcccctgcgcttcctgcaccatacatgtggcctccaacgattccctgatgaggcatcacatttcacggaagcggttagcgcccacctct 38944615  T
Q  196 cctatataagggtgatttcgcgtcaccctcaa 227  Q
    | ||||||||||||| || |||||||||||||    
T  38944616 cttatataagggtgacttagcgtcaccctcaa 38944647  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 5528343 - 5528391
Alignment:
Q  188 ctccttctcctatataagggtgatttcgcgtcaccctcaaggtacgatt 236  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||    
T  5528343 ctccttctcctatataagggtgattctgcgtcaccctcaaggtacgatt 5528391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 239
Target Start/End: Complemental strand, 10896353 - 10896176
Alignment:
Q  62 tgagtgagcatgctaattccggtgcacatcactgcattgaagcacgcccctgcacttcctgcaccgtacatgtggcttccaacgactcactgataagaca 161  Q
    |||||||||| |||| |||||||||||| |||  || |||||||| ||||  |||||| |||||||||||  || | ||||| | |||  ||   || |     
T  10896353 tgagtgagcacgctagttccggtgcacaccaccacactgaagcacacccccacacttcttgcaccgtacacatgtcctccaatggctccatgccgaggcg 10896254  T
Q  162 ccacatttcacggaagtcattagcatctccttctcctatataagggtgatttcgcgtcaccctcaaggtacgattcat 239  Q
    || ||||||||| || |  |||| | |||||||||||| |||||||| |||  ||||| |||||||||||||||||||    
T  10896253 ccgcatttcacgaaattttttagtacctccttctcctacataagggttattctgcgtcgccctcaaggtacgattcat 10896176  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 35314100 - 35314142
Alignment:
Q  197 ctatataagggtgatttcgcgtcaccctcaaggtacgattcat 239  Q
    ||||||||||| || || |||||||||||||||||||||||||    
T  35314100 ctatataagggagacttagcgtcaccctcaaggtacgattcat 35314142  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 34890116 - 34889995
Alignment:
Q  116 cttcctgcaccgtacatgtggcttccaacgactcactgataagacaccacatttcacggaagtcattagcatctccttctcctatataagggtgatttcg 215  Q
    ||||||||||||||| |||||| ||||||| |||  |||| || ||||||||||||| |||  | ||  | |||||||||||| ||||||||||||| ||    
T  34890116 cttcctgcaccgtacttgtggcctccaacggctccttgatgaggcaccacatttcacagaatccgttgtcgtctccttctcctgtataagggtgattccg 34890017  T
Q  216 cgtcaccctcaaggtacgattc 237  Q
    | |||||||||||||| |||||    
T  34890016 catcaccctcaaggtatgattc 34889995  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 26563113 - 26562993
Alignment:
Q  116 cttcctgcaccgtacatgtggcttccaacgactcactgataagacaccacatttcacggaagtcattagcatctccttctcctatataagggtgatttcg 215  Q
    ||||||||| | |||||||||| ||||||  ||| ||||| ||   |  |||||||| |||||| |||||  ||| || |||||| |||| |||||||||    
T  26563113 cttcctgcatcatacatgtggcctccaacagctccctgatgaggtgctgcatttcacagaagtcgttagcgcctctttatcctatctaagagtgatttcg 26563014  T
Q  216 cgtcaccctcaaggtacgatt 236  Q
    ||||||| |||||||||||||    
T  26563013 cgtcaccttcaaggtacgatt 26562993  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 6087483 - 6087626
Alignment:
Q  95 gcattgaagcacgcccctgcacttcctgcaccgtacatgtggcttccaacgactcactgataagacaccacatttcacggaagtcattagcatctccttc 194  Q
    |||||||||| ||| || || |||| ||||||||||||||||| ||||||||||| |||||||| |  ||||||||||||||  | ||| |  |||||||    
T  6087483 gcattgaagcccgctcc-gcgcttcttgcaccgtacatgtggcctccaacgactctctgataaggcgtcacatttcacggaaacccttaacgcctccttc 6087581  T
Q  195 tcctatataagggtgatttcgcgtcaccctcaaggtacgattcat 239  Q
    |||||||||| ||||  |  ||| |||||||||| ||||||||||    
T  6087582 tcctatataaaggtggctctgcggcaccctcaagatacgattcat 6087626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 239
Target Start/End: Original strand, 5696707 - 5696846
Alignment:
Q  99 tgaagcacgcccctgcacttcctgcaccgtacatgtggcttccaacgactcactgataagacaccacatttcacggaagtcattagcatctccttctcct 198  Q
    ||||||| |||||||  ||||||||| ||| |||||||| ||||||| ||| | ||| || | || ||||||||  || |  |||||  ||||| | |||    
T  5696707 tgaagcatgcccctgt-cttcctgcatcgttcatgtggcctccaacggctctcggatgaggcgccgcatttcacataatttgttagcgcctcctccccct 5696805  T
Q  199 atataagggtgatttcgcgtcaccctcaaggtacgattcat 239  Q
    ||||||||| ||||  |||||||||||||||||||||||||    
T  5696806 atataagggcgattctgcgtcaccctcaaggtacgattcat 5696846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 39003350 - 39003230
Alignment:
Q  120 ctgcaccgtacatgtggcttccaacgactcactgataagacaccacatttcacggaagtcattagcatctccttctcc----tatataagggtgatttcg 215  Q
    |||||||||||||||| | ||||||| ||| || || || |||| |||||| | ||||   |||||| ||||| |||     ||||||||||||||| ||    
T  39003350 ctgcaccgtacatgtgccctccaacggctccctaatgaggcaccgcatttcgcagaagatgttagcacctcctcctcgatcttatataagggtgattccg 39003251  T
Q  216 cgtcaccctcaaggtacgatt 236  Q
    | |||||||||||||||||||    
T  39003250 catcaccctcaaggtacgatt 39003230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 1485491 - 1485450
Alignment:
Q  198 tatataagggtgatttcgcgtcaccctcaaggtacgattcat 239  Q
    ||||||||| ||||| |||||||||||||||||| |||||||    
T  1485491 tatataaggatgattccgcgtcaccctcaaggtatgattcat 1485450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 239
Target Start/End: Original strand, 3463567 - 3463688
Alignment:
Q  118 tcctgcaccgtacatgtggcttccaacgactcactgataagacaccacatttcacggaagtcattagcatctccttctcctatataagggtgatttcgcg 217  Q
    ||||||||| |||||||| |||| |||||  | ||||| ||   |||||||| ||||||| | |||||  ||||||| ||||||||||||||| |    |    
T  3463567 tcctgcaccatacatgtgccttctaacgatcccctgatgaggtgccacattttacggaagccgttagcgcctccttcgcctatataagggtgactcattg 3463666  T
Q  218 tcaccctcaaggtacgattcat 239  Q
    ||||||||||  ||||||||||    
T  3463667 tcaccctcaaaatacgattcat 3463688  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 21682563 - 21682599
Alignment:
Q  196 cctatataagggtgatttcgcgtcaccctcaaggtac 232  Q
    ||||||||||||||| || ||||||||||||||||||    
T  21682563 cctatataagggtgaatttgcgtcaccctcaaggtac 21682599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 30655910 - 30655836
Alignment:
Q  165 catttcacggaagtcattagcatctccttctcctatataagggtgatttcgcgtcaccctcaaggtacgattcat 239  Q
    |||||||||||| || |||||||||||||||  ||||||||||||||| ||| ||||||||||||||| ||||||    
T  30655910 catttcacggaattctttagcatctccttcttgtatataagggtgattccgcatcaccctcaaggtacaattcat 30655836  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 239
Target Start/End: Complemental strand, 11714421 - 11714245
Alignment:
Q  62 tgagtgagcatgctaattccggtgcacatcactgcattgaagcacgcccctgcacttcctgcaccgtacatgtggcttccaacgactcactgataagaca 161  Q
    |||||||||| |||| |||||||||| ||||  |   ||||||||||||||   |||||||||| |||||  ||||| |||||| ||| ||||| || ||    
T  11714421 tgagtgagcacgctagttccggtgcatatcatcgttctgaagcacgcccctatgcttcctgcactgtacacatggctaccaacggctc-ctgatgaggca 11714323  T
Q  162 ccacatttcacggaagtcattagcatctccttctcctatataagggtgatttcgcgtcaccctcaaggtacgattcat 239  Q
    |   ||| || | ||||| | |||  || |||||||||||||||||||| | | ||||||||||||||||| ||||||    
T  11714322 ctgaattacatgaaagtcgtcagcgccttcttctcctatataagggtgactccacgtcaccctcaaggtacaattcat 11714245  T

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Target: scaffold0606 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 1962 - 2010
Alignment:
Q  191 cttctcctatataagggtgatttcgcgtcaccctcaaggtacgattcat 239  Q
    ||||||||||||||||||||||  || ||||||||||||||||||||||    
T  1962 cttctcctatataagggtgattctgcatcaccctcaaggtacgattcat 2010  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 15663527 - 15663601
Alignment:
Q  165 catttcacggaagtcattagcatctccttctcctatataagggtgatttcgcgtcaccctcaaggtacgattcat 239  Q
    ||||||||||||||| |||||||| | ||| ||||||||||| ||| |   ||||||||||||||||||| ||||    
T  15663527 catttcacggaagtcgttagcatcactttcacctatataaggatgactcaacgtcaccctcaaggtacgactcat 15663601  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 37496812 - 37496755
Alignment:
Q  116 cttcctgcaccgtacatgtggcttccaacgactcactgataagacaccacatttcacg 173  Q
    |||||||||||||||||||||| ||||| || || ||||| || ||||||||||||||    
T  37496812 cttcctgcaccgtacatgtggcctccaatgattccctgatgaggcaccacatttcacg 37496755  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 42205076 - 42205020
Alignment:
Q  165 catttcacggaagtcattagcatctccttctcctatataagggtgatttcgcgtcaccct 224  Q
    ||||| ||||||||  ||||||||||||   ||||||||||||||||||| |||||||||    
T  42205076 cattttacggaagtagttagcatctcct---cctatataagggtgatttcacgtcaccct 42205020  T

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