View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17227_low_11 (Length: 243)
Name: NF17227_low_11
Description: NF17227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17227_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 115 - 230
Target Start/End: Complemental strand, 35406152 - 35406037
Alignment:
| Q |
115 |
tgacttgttccaaggcttctgtggtaatagtattaatgataaagaagggaaaggttggtgagatgaattaattaaggtgttgctcagagactcttttgaa |
214 |
Q |
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| T |
35406152 |
tgacttgttccaaggcttctgtggtaatagtattaatgataaagaagggaaaggttggtgagatgaattaattaaggtgttgctcagagactcttttgaa |
35406053 |
T |
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| Q |
215 |
ctttcagcatcaaatc |
230 |
Q |
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| T |
35406052 |
ctttcagcatcaaatc |
35406037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 35406266 - 35406185
Alignment:
| Q |
1 |
ctttcaatgcaaggaaagaaagacaagaataagctagaaaaatgtgattttcatgtgcattaccatgctaaaacaccaacac |
82 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35406266 |
ctttcaatgcaaggaaagaaagacaagaataaactagaaaaatgtgattttcatgtgcattaccatgctaaaacaccaacac |
35406185 |
T |
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