View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17227_low_2 (Length: 402)
Name: NF17227_low_2
Description: NF17227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17227_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 383
Target Start/End: Complemental strand, 37215111 - 37214740
Alignment:
| Q |
16 |
agagccaaatcattgctttaaatannnnnnncttacctgagccgcgaaatcgttggagtcggaatcaggtgaagaacttgtatccagccttttgattgca |
115 |
Q |
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| T |
37215111 |
agagccaaatcattgctttaaataattttttcttacctgagccgcgaaatcgttggagtcggaatcaggtgaagaacttgtatccagccttttgattgca |
37215012 |
T |
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| Q |
116 |
gcttcagtaccatcattcatttttgcatagtaaacccttccatacgaaccttcaccaatgaaggcctttgaaccaaagtttcctgttaatctatttaact |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37215011 |
gcttcagtaccatcattcatttttgcatagtaaacccttccatacgaaccttcaccaatgaaggcctttgaaccaaagtttcctgttaatctatttaact |
37214912 |
T |
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| Q |
216 |
cagccaatgatatcgagggtatctcaattggtaatactttctgtggaccaccactcttggtaatgttgctccttggctctcctctatcattgcctatat- |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37214911 |
cagccaatgatatcgagggtatctcaattggtaatactttctgtggaccaccactcttggtaatgttgctccttggctctcctctatcattgcctatatt |
37214812 |
T |
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| Q |
315 |
---tcatacaaggctactctaaattatcacattcaaatcatttcattacattatataggatcacgttcaatc |
383 |
Q |
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| T |
37214811 |
cattcatacaaggctactctaaattatcacattcaaatcatttcataacattatataggatcacgttcaatc |
37214740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 23408274 - 23408203
Alignment:
| Q |
232 |
gggtatctcaattggtaatactttctgtggaccaccactcttggtaatgttgctccttggctctcctctatc |
303 |
Q |
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| T |
23408274 |
gggtgtctcaatttctaatgctttctgcggaccaccactcttgataatattgctccttggctctcctctatc |
23408203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 52717148 - 52717091
Alignment:
| Q |
138 |
ttgcatagtaaacccttccatacgaaccttcaccaatgaaggcctttgaaccaaagtt |
195 |
Q |
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||||||| || ||||| |||||||| ||||||||||| || |||||||| |||||||| |
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| T |
52717148 |
ttgcataatacaccctcccatacgacccttcaccaatcaatgcctttgatccaaagtt |
52717091 |
T |
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