View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17227_low_6 (Length: 323)
Name: NF17227_low_6
Description: NF17227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17227_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 5 - 267
Target Start/End: Original strand, 36075087 - 36075349
Alignment:
| Q |
5 |
gagaagcaaagggggaggaaaatgcagtgttgattttagagagagaaagaggtactggttactttggttgtagagagataaagtgacaaaataattatct |
104 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36075087 |
gagaagaaaagggggaggaaaatgcagtgttgattttagagagagaaagaggtactggttactttggttgtagagagataaagtgacaaaataattatct |
36075186 |
T |
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| Q |
105 |
gaatttgttacattcatccttctggattcatgttgttggttagtggattgatgatgatgcttcaataagaacaaaataattgaataagtcgagagaaatt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36075187 |
gaatttgttacattcatccttctggattcatgttgttggttagtggattgatgatgatgcttcaataagaacaaaataattgaataagtagagagaaatt |
36075286 |
T |
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| Q |
205 |
taaatctgagtgtctcaaaagatgaaacatctacagatatggagaaatagaaaaactccattg |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36075287 |
taaatctgagtgtctcaaaagatgaaacatctacagatatggagaaatagaaaaactccattg |
36075349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 267
Target Start/End: Original strand, 42169064 - 42169326
Alignment:
| Q |
5 |
gagaagcaaagggggaggaaaatgcagtgttgattttagagagagaaagaggtactggttactttggttgtagagagataaagtgacaaaataattatct |
104 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42169064 |
gagaagaaaagagggaggaaaatgcagtgttgattttagagagagaaagcggtactggttactttggttgtatagagataaagtgacaaaataattatct |
42169163 |
T |
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| Q |
105 |
gaatttgttacattcatccttctggattcatgttgttggttagtggattgatgatgatgcttcaataagaacaaaataattgaataagtcgagagaaatt |
204 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
42169164 |
gaatttgttacattcatctttctggattcatgttgttggttagtggattgatgatgatgcttcaataagaacaaaataattgaagaagtagagagaaatt |
42169263 |
T |
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| Q |
205 |
taaatctgagtgtctcaaaagatgaaacatctacagatatggagaaatagaaaaactccattg |
267 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
42169264 |
taaatctgagtgtctcaaaagatgaaacatctacatatatggagaaatagaaaaagtccattg |
42169326 |
T |
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